Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

SCART1 (scavenger receptor protein family member)

Identity

Other alias-
HGNC (Hugo) -
LocusID (NCBI) 619207
Atlas_Id 73029
Location 10q26.3  [Link to chromosome band 10q26]
Location_base_pair Starts at 135280823 and ends at 135283248 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)-   -
Cards
Entrez_Gene (NCBI)SCART1  619207  scavenger receptor protein family member
Aliases
GeneCards (Weizmann)SCART1
Ensembl hg19 (Hinxton)ENSG00000214279 [Gene_View]  chr10:135280823-135283248 [Contig_View]  SCART1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000214279 [Gene_View]  chr10:135280823-135283248 [Contig_View]  SCART1 [Vega]
ICGC DataPortalENSG00000214279
TCGA cBioPortalSCART1
AceView (NCBI)SCART1
Genatlas (Paris)SCART1
WikiGenes619207
SOURCE (Princeton)SCART1
Genetics Home Reference (NIH)SCART1
Genomic and cartography
GoldenPath hg19 (UCSC)SCART1  -     chr10:135280823-135283248 +  10q26.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SCART1  -     10q26.3   [Description]    (hg38-Dec_2013)
EnsemblSCART1 - 10q26.3 [CytoView hg19]  SCART1 - 10q26.3 [CytoView hg38]
Mapping of homologs : NCBISCART1 [Mapview hg19]  SCART1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK123374 AK126713 AK127253 AK160367 BC038300
RefSeq transcript (Entrez)NM_001033584
RefSeq genomic (Entrez)NC_000010 NC_018921 NT_030059 NW_004929377
Consensus coding sequences : CCDS (NCBI)SCART1
Cluster EST : UnigeneHs.659384 [ NCBI ]
CGAP (NCI)Hs.659384
Alternative Splicing GalleryENSG00000214279
Gene ExpressionSCART1 [ NCBI-GEO ]   SCART1 [ EBI - ARRAY_EXPRESS ]   SCART1 [ SEEK ]   SCART1 [ MEM ]
Gene Expression Viewer (FireBrowse)SCART1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)619207
GTEX Portal (Tissue expression)SCART1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ4G0T1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ4G0T1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ4G0T1
Splice isoforms : SwissVarQ4G0T1
PhosPhoSitePlusQ4G0T1
Domaine pattern : Prosite (Expaxy)SRCR_1 (PS00420)    SRCR_2 (PS50287)   
Domains : Interpro (EBI)SRCR    SRCR-like_dom   
Domain families : Pfam (Sanger)SRCR (PF00530)   
Domain families : Pfam (NCBI)pfam00530   
Domain families : Smart (EMBL)SR (SM00202)  
Conserved Domain (NCBI)SCART1
DMDM Disease mutations619207
Blocks (Seattle)SCART1
SuperfamilyQ4G0T1
Human Protein AtlasENSG00000214279
Peptide AtlasQ4G0T1
IPIIPI00418544   IPI00935213   IPI00926863   
Protein Interaction databases
DIP (DOE-UCLA)Q4G0T1
IntAct (EBI)Q4G0T1
FunCoupENSG00000214279
BioGRIDSCART1
STRING (EMBL)SCART1
ZODIACSCART1
Ontologies - Pathways
QuickGOQ4G0T1
Ontology : AmiGOimmune system process  scavenger receptor activity  receptor-mediated endocytosis  integral component of membrane  
Ontology : EGO-EBIimmune system process  scavenger receptor activity  receptor-mediated endocytosis  integral component of membrane  
NDEx NetworkSCART1
Atlas of Cancer Signalling NetworkSCART1
Wikipedia pathwaysSCART1
Orthology - Evolution
OrthoDB619207
GeneTree (enSembl)ENSG00000214279
Phylogenetic Trees/Animal Genes : TreeFam-
HOVERGENQ4G0T1
HOGENOMQ4G0T1
Homologs : HomoloGeneSCART1
Homology/Alignments : Family Browser (UCSC)SCART1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSCART1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SCART1
dbVarSCART1
ClinVarSCART1
1000_GenomesSCART1 
Exome Variant ServerSCART1
ExAC (Exome Aggregation Consortium)SCART1 (select the gene name)
Genetic variants : HAPMAP619207
Genomic Variants (DGV)SCART1 [DGVbeta]
DECIPHER (Syndromes)10:135280823-135283248  ENSG00000214279
CONAN: Copy Number AnalysisSCART1 
Mutations
ICGC Data Portal- 
TCGA Data Portal- 
Broad Tumor Portal-
OASIS Portal- [ Somatic mutations - Copy number]
Mutations and Diseases : HGMD-
BioMutasearch SCART1
DgiDB (Drug Gene Interaction Database)SCART1
DoCM (Curated mutations)SCART1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SCART1 (select a term)
intoGenSCART1
Cancer3DSCART1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenSCART1
Genetic Testing Registry SCART1
NextProtQ4G0T1 [Medical]
TSGene619207
GENETestsSCART1
Huge Navigator - [HugePedia]
snp3D : Map Gene to Disease619207
BioCentury BCIQSCART1
ClinGenSCART1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD619207
Clinical trialSCART1
Miscellaneous
canSAR (ICR)SCART1 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSCART1
EVEXSCART1
GoPubMedSCART1
iHOPSCART1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:42:29 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.