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SCCPDH (saccharopine dehydrogenase (putative))

Identity

Alias (NCBI)CGI-49
NET11
HGNC (Hugo) SCCPDH
HGNC Alias symbCGI-49
NET11
LocusID (NCBI) 51097
Atlas_Id 73030
Location 1q44  [Link to chromosome band 1q44]
Location_base_pair Starts at 246724409 and ends at 246768137 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ADNP (20q13.13) / SCCPDH (1q44)PVT1 (8q24.21) / SCCPDH (1q44)SCCPDH (1q44) / ARAP2 (4p14)
SCCPDH (1q44) / CNST (1q44)SCCPDH (1q44) / LUM (12q21.33)SCCPDH (1q44) / SMARCC2 (12q13.2)
SCCPDH (1q44) / TCF3 (19p13.3)ZNF670-ZNF695 (1q44) / SCCPDH (1q44)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)SCCPDH   24275
Cards
Entrez_Gene (NCBI)SCCPDH    saccharopine dehydrogenase (putative)
AliasesCGI-49; NET11
GeneCards (Weizmann)SCCPDH
Ensembl hg19 (Hinxton)ENSG00000143653 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000143653 [Gene_View]  ENSG00000143653 [Sequence]  chr1:246724409-246768137 [Contig_View]  SCCPDH [Vega]
ICGC DataPortalENSG00000143653
TCGA cBioPortalSCCPDH
AceView (NCBI)SCCPDH
Genatlas (Paris)SCCPDH
SOURCE (Princeton)SCCPDH
Genetics Home Reference (NIH)SCCPDH
Genomic and cartography
GoldenPath hg38 (UCSC)SCCPDH  -     chr1:246724409-246768137 +  1q44   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SCCPDH  -     1q44   [Description]    (hg19-Feb_2009)
GoldenPathSCCPDH - 1q44 [CytoView hg19]  SCCPDH - 1q44 [CytoView hg38]
ImmunoBaseENSG00000143653
Genome Data Viewer NCBISCCPDH [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AF151807 AK075178 AW515488 BC026185 BG258610
RefSeq transcript (Entrez)NM_016002
Consensus coding sequences : CCDS (NCBI)SCCPDH
Gene ExpressionSCCPDH [ NCBI-GEO ]   SCCPDH [ EBI - ARRAY_EXPRESS ]   SCCPDH [ SEEK ]   SCCPDH [ MEM ]
Gene Expression Viewer (FireBrowse)SCCPDH [ Firebrowse - Broad ]
GenevisibleExpression of SCCPDH in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51097
GTEX Portal (Tissue expression)SCCPDH
Human Protein AtlasENSG00000143653-SCCPDH [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NBX0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NBX0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NBX0
PhosPhoSitePlusQ8NBX0
Domains : Interpro (EBI)NAD(P)-bd_dom_sf    Sacchrp_dh_C    Sacchrp_dh_NADP   
Domain families : Pfam (Sanger)Sacchrp_dh_C (PF16653)    Sacchrp_dh_NADP (PF03435)   
Domain families : Pfam (NCBI)pfam16653    pfam03435   
Conserved Domain (NCBI)SCCPDH
SuperfamilyQ8NBX0
AlphaFold pdb e-kbQ8NBX0   
Human Protein Atlas [tissue]ENSG00000143653-SCCPDH [tissue]
HPRD13038
Protein Interaction databases
DIP (DOE-UCLA)Q8NBX0
IntAct (EBI)Q8NBX0
BioGRIDSCCPDH
STRING (EMBL)SCCPDH
ZODIACSCCPDH
Ontologies - Pathways
QuickGOQ8NBX0
Ontology : AmiGOplatelet degranulation  extracellular region  nucleus  mitochondrion  mitochondrion  lipid droplet  lipid droplet  plasma membrane  glycolipid biosynthetic process  membrane  oxidoreductase activity  midbody  platelet alpha granule lumen  
Ontology : EGO-EBIplatelet degranulation  extracellular region  nucleus  mitochondrion  mitochondrion  lipid droplet  lipid droplet  plasma membrane  glycolipid biosynthetic process  membrane  oxidoreductase activity  midbody  platelet alpha granule lumen  
NDEx NetworkSCCPDH
Atlas of Cancer Signalling NetworkSCCPDH
Wikipedia pathwaysSCCPDH
Orthology - Evolution
OrthoDB51097
GeneTree (enSembl)ENSG00000143653
Phylogenetic Trees/Animal Genes : TreeFamSCCPDH
Homologs : HomoloGeneSCCPDH
Homology/Alignments : Family Browser (UCSC)SCCPDH
Gene fusions - Rearrangements
Fusion : QuiverSCCPDH
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSCCPDH [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SCCPDH
dbVarSCCPDH
ClinVarSCCPDH
MonarchSCCPDH
1000_GenomesSCCPDH 
Exome Variant ServerSCCPDH
GNOMAD BrowserENSG00000143653
Varsome BrowserSCCPDH
ACMGSCCPDH variants
VarityQ8NBX0
Genomic Variants (DGV)SCCPDH [DGVbeta]
DECIPHERSCCPDH [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSCCPDH 
Mutations
ICGC Data PortalSCCPDH 
TCGA Data PortalSCCPDH 
Broad Tumor PortalSCCPDH
OASIS PortalSCCPDH [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSCCPDH  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DSCCPDH
Mutations and Diseases : HGMDSCCPDH
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaSCCPDH
DgiDB (Drug Gene Interaction Database)SCCPDH
DoCM (Curated mutations)SCCPDH
CIViC (Clinical Interpretations of Variants in Cancer)SCCPDH
Cancer3DSCCPDH
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETSCCPDH
MedgenSCCPDH
Genetic Testing Registry SCCPDH
NextProtQ8NBX0 [Medical]
GENETestsSCCPDH
Target ValidationSCCPDH
Huge Navigator SCCPDH [HugePedia]
ClinGenSCCPDH
Clinical trials, drugs, therapy
MyCancerGenomeSCCPDH
Protein Interactions : CTDSCCPDH
Pharm GKB GenePA142670949
PharosQ8NBX0
Clinical trialSCCPDH
Miscellaneous
canSAR (ICR)SCCPDH
HarmonizomeSCCPDH
DataMed IndexSCCPDH
Probes
Litterature
PubMed38 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXSCCPDH
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 16:19:57 CEST 2021

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