Atlas of Genetics and Cytogenetics in Oncology and Haematology


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SCD5 (stearoyl-CoA desaturase 5)

Identity

Alias_namesSCD4
stearoyl-CoA desaturase 4
Alias_symbol (synonym)ACOD4
FLJ21032
FADS4
HSCD5
Other aliasSCD2
HGNC (Hugo) SCD5
LocusID (NCBI) 79966
Atlas_Id 55387
Location 4q21.22  [Link to chromosome band 4q21]
Location_base_pair Starts at 82629537 and ends at 82798857 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
TMEM150C (4q21.22) / SCD5 (4q21.22)TMEM150C 4q21.22 / SCD5 4q21.22

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SCD5   21088
Cards
Entrez_Gene (NCBI)SCD5  79966  stearoyl-CoA desaturase 5
AliasesACOD4; FADS4; HSCD5; SCD2; 
SCD4
GeneCards (Weizmann)SCD5
Ensembl hg19 (Hinxton)ENSG00000145284 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000145284 [Gene_View]  chr4:82629537-82798857 [Contig_View]  SCD5 [Vega]
ICGC DataPortalENSG00000145284
TCGA cBioPortalSCD5
AceView (NCBI)SCD5
Genatlas (Paris)SCD5
WikiGenes79966
SOURCE (Princeton)SCD5
Genetics Home Reference (NIH)SCD5
Genomic and cartography
GoldenPath hg38 (UCSC)SCD5  -     chr4:82629537-82798857 -  4q21.22   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SCD5  -     4q21.22   [Description]    (hg19-Feb_2009)
EnsemblSCD5 - 4q21.22 [CytoView hg19]  SCD5 - 4q21.22 [CytoView hg38]
Mapping of homologs : NCBISCD5 [Mapview hg19]  SCD5 [Mapview hg38]
OMIM608370   
Gene and transcription
Genbank (Entrez)AF389338 AK024685 AL831891 BC004936 BC048971
RefSeq transcript (Entrez)NM_001037582 NM_024906
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SCD5
Cluster EST : UnigeneHs.379191 [ NCBI ]
CGAP (NCI)Hs.379191
Alternative Splicing GalleryENSG00000145284
Gene ExpressionSCD5 [ NCBI-GEO ]   SCD5 [ EBI - ARRAY_EXPRESS ]   SCD5 [ SEEK ]   SCD5 [ MEM ]
Gene Expression Viewer (FireBrowse)SCD5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79966
GTEX Portal (Tissue expression)SCD5
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86SK9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ86SK9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ86SK9
Splice isoforms : SwissVarQ86SK9
PhosPhoSitePlusQ86SK9
Domaine pattern : Prosite (Expaxy)FATTY_ACID_DESATUR_1 (PS00476)   
Domains : Interpro (EBI)Acyl-CoA_DS    FA_desaturase_dom    FADS-1_CS   
Domain families : Pfam (Sanger)FA_desaturase (PF00487)   
Domain families : Pfam (NCBI)pfam00487   
Conserved Domain (NCBI)SCD5
DMDM Disease mutations79966
Blocks (Seattle)SCD5
SuperfamilyQ86SK9
Human Protein AtlasENSG00000145284
Peptide AtlasQ86SK9
HPRD09756
IPIIPI00465139   IPI00016539   IPI00015151   
Protein Interaction databases
DIP (DOE-UCLA)Q86SK9
IntAct (EBI)Q86SK9
FunCoupENSG00000145284
BioGRIDSCD5
STRING (EMBL)SCD5
ZODIACSCD5
Ontologies - Pathways
QuickGOQ86SK9
Ontology : AmiGOstearoyl-CoA 9-desaturase activity  stearoyl-CoA 9-desaturase activity  endoplasmic reticulum membrane  endoplasmic reticulum membrane  unsaturated fatty acid biosynthetic process  integral component of membrane  oxidoreductase activity  long-chain fatty-acyl-CoA biosynthetic process  metal ion binding  oxidation-reduction process  
Ontology : EGO-EBIstearoyl-CoA 9-desaturase activity  stearoyl-CoA 9-desaturase activity  endoplasmic reticulum membrane  endoplasmic reticulum membrane  unsaturated fatty acid biosynthetic process  integral component of membrane  oxidoreductase activity  long-chain fatty-acyl-CoA biosynthetic process  metal ion binding  oxidation-reduction process  
Pathways : KEGGBiosynthesis of unsaturated fatty acids    PPAR signaling pathway   
NDEx NetworkSCD5
Atlas of Cancer Signalling NetworkSCD5
Wikipedia pathwaysSCD5
Orthology - Evolution
OrthoDB79966
GeneTree (enSembl)ENSG00000145284
Phylogenetic Trees/Animal Genes : TreeFamSCD5
HOVERGENQ86SK9
HOGENOMQ86SK9
Homologs : HomoloGeneSCD5
Homology/Alignments : Family Browser (UCSC)SCD5
Gene fusions - Rearrangements
Fusion : MitelmanTMEM150C/SCD5 [4q21.22/4q21.22]  [t(4;4)(q21;q21)]  
Fusion: TCGATMEM150C 4q21.22 SCD5 4q21.22 LGG
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSCD5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SCD5
dbVarSCD5
ClinVarSCD5
1000_GenomesSCD5 
Exome Variant ServerSCD5
ExAC (Exome Aggregation Consortium)SCD5 (select the gene name)
Genetic variants : HAPMAP79966
Genomic Variants (DGV)SCD5 [DGVbeta]
DECIPHERSCD5 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSCD5 
Mutations
ICGC Data PortalSCD5 
TCGA Data PortalSCD5 
Broad Tumor PortalSCD5
OASIS PortalSCD5 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSCD5  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSCD5
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SCD5
DgiDB (Drug Gene Interaction Database)SCD5
DoCM (Curated mutations)SCD5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SCD5 (select a term)
intoGenSCD5
Cancer3DSCD5(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608370   
Orphanet
MedgenSCD5
Genetic Testing Registry SCD5
NextProtQ86SK9 [Medical]
TSGene79966
GENETestsSCD5
Huge Navigator SCD5 [HugePedia]
snp3D : Map Gene to Disease79966
BioCentury BCIQSCD5
ClinGenSCD5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79966
Chemical/Pharm GKB GenePA134934692
Clinical trialSCD5
Miscellaneous
canSAR (ICR)SCD5 (select the gene name)
Probes
Litterature
PubMed19 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSCD5
EVEXSCD5
GoPubMedSCD5
iHOPSCD5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:36:12 CEST 2017

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