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SCEL (sciellin)

Identity

Alias_symbol (synonym)FLJ21667
MGC22531
Other alias-
HGNC (Hugo) SCEL
LocusID (NCBI) 8796
Atlas_Id 43625
Location 13q22.3  [Link to chromosome band 13q22]
Location_base_pair Starts at 78109809 and ends at 78219398 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
CAPZB (1p36.13) / SCEL (13q22.3)DLD (7q31.1) / SCEL (13q22.3)CAPZB 1p36.13 / SCEL 13q22.3
DLD 7q31.1 / SCEL 13q22.3

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SCEL   10573
Cards
Entrez_Gene (NCBI)SCEL  8796  sciellin
Aliases
GeneCards (Weizmann)SCEL
Ensembl hg19 (Hinxton)ENSG00000136155 [Gene_View]  chr13:78109809-78219398 [Contig_View]  SCEL [Vega]
Ensembl hg38 (Hinxton)ENSG00000136155 [Gene_View]  chr13:78109809-78219398 [Contig_View]  SCEL [Vega]
ICGC DataPortalENSG00000136155
TCGA cBioPortalSCEL
AceView (NCBI)SCEL
Genatlas (Paris)SCEL
WikiGenes8796
SOURCE (Princeton)SCEL
Genetics Home Reference (NIH)SCEL
Genomic and cartography
GoldenPath hg19 (UCSC)SCEL  -     chr13:78109809-78219398 +  13q22.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SCEL  -     13q22.3   [Description]    (hg38-Dec_2013)
EnsemblSCEL - 13q22.3 [CytoView hg19]  SCEL - 13q22.3 [CytoView hg38]
Mapping of homologs : NCBISCEL [Mapview hg19]  SCEL [Mapview hg38]
OMIM604112   
Gene and transcription
Genbank (Entrez)AF045941 AK025320 AK222720 AK301659 BC020726
RefSeq transcript (Entrez)NM_001160706 NM_003843 NM_144777
RefSeq genomic (Entrez)NC_000013 NC_018924 NT_024524 NW_004929388
Consensus coding sequences : CCDS (NCBI)SCEL
Cluster EST : UnigeneHs.534699 [ NCBI ]
CGAP (NCI)Hs.534699
Alternative Splicing GalleryENSG00000136155
Gene ExpressionSCEL [ NCBI-GEO ]   SCEL [ EBI - ARRAY_EXPRESS ]   SCEL [ SEEK ]   SCEL [ MEM ]
Gene Expression Viewer (FireBrowse)SCEL [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)8796
GTEX Portal (Tissue expression)SCEL
Protein : pattern, domain, 3D structure
UniProt/SwissProtO95171   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO95171  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO95171
Splice isoforms : SwissVarO95171
PhosPhoSitePlusO95171
Domaine pattern : Prosite (Expaxy)LIM_DOMAIN_1 (PS00478)    LIM_DOMAIN_2 (PS50023)   
Domains : Interpro (EBI)Znf_LIM   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)LIM (SM00132)  
Conserved Domain (NCBI)SCEL
DMDM Disease mutations8796
Blocks (Seattle)SCEL
SuperfamilyO95171
Human Protein AtlasENSG00000136155
Peptide AtlasO95171
HPRD09161
IPIIPI00329108   IPI00478672   IPI00921856   IPI00983031   
Protein Interaction databases
DIP (DOE-UCLA)O95171
IntAct (EBI)O95171
FunCoupENSG00000136155
BioGRIDSCEL
STRING (EMBL)SCEL
ZODIACSCEL
Ontologies - Pathways
QuickGOO95171
Ontology : AmiGOcornified envelope  protein binding  cytoplasm  cytoplasm  zinc ion binding  epidermis development  epidermis development  embryo development  keratinocyte differentiation  extracellular exosome  
Ontology : EGO-EBIcornified envelope  protein binding  cytoplasm  cytoplasm  zinc ion binding  epidermis development  epidermis development  embryo development  keratinocyte differentiation  extracellular exosome  
NDEx NetworkSCEL
Atlas of Cancer Signalling NetworkSCEL
Wikipedia pathwaysSCEL
Orthology - Evolution
OrthoDB8796
GeneTree (enSembl)ENSG00000136155
Phylogenetic Trees/Animal Genes : TreeFamSCEL
HOVERGENO95171
HOGENOMO95171
Homologs : HomoloGeneSCEL
Homology/Alignments : Family Browser (UCSC)SCEL
Gene fusions - Rearrangements
Fusion : MitelmanCAPZB/SCEL [1p36.13/13q22.3]  [t(1;13)(p36;q22)]  
Fusion : MitelmanDLD/SCEL [7q31.1/13q22.3]  [t(7;13)(q31;q22)]  
Fusion: TCGACAPZB 1p36.13 SCEL 13q22.3 BRCA
Fusion: TCGADLD 7q31.1 SCEL 13q22.3 PRAD
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSCEL [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SCEL
dbVarSCEL
ClinVarSCEL
1000_GenomesSCEL 
Exome Variant ServerSCEL
ExAC (Exome Aggregation Consortium)SCEL (select the gene name)
Genetic variants : HAPMAP8796
Genomic Variants (DGV)SCEL [DGVbeta]
DECIPHER (Syndromes)13:78109809-78219398  ENSG00000136155
CONAN: Copy Number AnalysisSCEL 
Mutations
ICGC Data PortalSCEL 
TCGA Data PortalSCEL 
Broad Tumor PortalSCEL
OASIS PortalSCEL [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSCEL  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSCEL
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SCEL
DgiDB (Drug Gene Interaction Database)SCEL
DoCM (Curated mutations)SCEL (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SCEL (select a term)
intoGenSCEL
Cancer3DSCEL(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM604112   
Orphanet
MedgenSCEL
Genetic Testing Registry SCEL
NextProtO95171 [Medical]
TSGene8796
GENETestsSCEL
Huge Navigator SCEL [HugePedia]
snp3D : Map Gene to Disease8796
BioCentury BCIQSCEL
ClinGenSCEL
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD8796
Chemical/Pharm GKB GenePA34986
Clinical trialSCEL
Miscellaneous
canSAR (ICR)SCEL (select the gene name)
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSCEL
EVEXSCEL
GoPubMedSCEL
iHOPSCEL
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:18:26 CEST 2017

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