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SCFD1 (sec1 family domain containing 1)

Identity

Alias_namesC14orf163
chromosome 14 open reading frame 163
Alias_symbol (synonym)RA410
KIAA0917
STXBP1L2
SLY1
Other aliasSLY1P
HGNC (Hugo) SCFD1
LocusID (NCBI) 23256
Atlas_Id 73032
Location 14q12  [Link to chromosome band 14q12]
Location_base_pair Starts at 30622319 and ends at 30735827 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
BIRC6 (2p22.3) / SCFD1 (14q12)DHRS4 (14q11.2) / SCFD1 (14q12)FRMD6 (14q22.1) / SCFD1 (14q12)
HEATR5A (14q12) / SCFD1 (14q12)NUBPL (14q12) / SCFD1 (14q12)SCFD1 (14q12) / MLLT3 (9p21.3)
STRN3 (14q12) / SCFD1 (14q12)DHRS4 SCFD1NUBPL SCFD1
FRMD6 SCFD1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SCFD1   20726
Cards
Entrez_Gene (NCBI)SCFD1  23256  sec1 family domain containing 1
AliasesC14orf163; RA410; SLY1; SLY1P; 
STXBP1L2
GeneCards (Weizmann)SCFD1
Ensembl hg19 (Hinxton)ENSG00000092108 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000092108 [Gene_View]  chr14:30622319-30735827 [Contig_View]  SCFD1 [Vega]
ICGC DataPortalENSG00000092108
TCGA cBioPortalSCFD1
AceView (NCBI)SCFD1
Genatlas (Paris)SCFD1
WikiGenes23256
SOURCE (Princeton)SCFD1
Genetics Home Reference (NIH)SCFD1
Genomic and cartography
GoldenPath hg38 (UCSC)SCFD1  -     chr14:30622319-30735827 +  14q12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SCFD1  -     14q12   [Description]    (hg19-Feb_2009)
EnsemblSCFD1 - 14q12 [CytoView hg19]  SCFD1 - 14q12 [CytoView hg38]
Mapping of homologs : NCBISCFD1 [Mapview hg19]  SCFD1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB020724 AF067205 AF086916 AF092139 AF110646
RefSeq transcript (Entrez)NM_001257376 NM_001283031 NM_001283032 NM_001283033 NM_016106 NM_182835
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SCFD1
Cluster EST : UnigeneHs.369168 [ NCBI ]
CGAP (NCI)Hs.369168
Alternative Splicing GalleryENSG00000092108
Gene ExpressionSCFD1 [ NCBI-GEO ]   SCFD1 [ EBI - ARRAY_EXPRESS ]   SCFD1 [ SEEK ]   SCFD1 [ MEM ]
Gene Expression Viewer (FireBrowse)SCFD1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)23256
GTEX Portal (Tissue expression)SCFD1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8WVM8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8WVM8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8WVM8
Splice isoforms : SwissVarQ8WVM8
PhosPhoSitePlusQ8WVM8
Domains : Interpro (EBI)Sec-1-like_dom2    Sec1-like   
Domain families : Pfam (Sanger)Sec1 (PF00995)   
Domain families : Pfam (NCBI)pfam00995   
Conserved Domain (NCBI)SCFD1
DMDM Disease mutations23256
Blocks (Seattle)SCFD1
SuperfamilyQ8WVM8
Human Protein AtlasENSG00000092108
Peptide AtlasQ8WVM8
HPRD10210
IPIIPI00165261   IPI01013368   IPI01015213   IPI01012904   IPI01024761   IPI01025756   IPI01025906   IPI01026004   IPI01026024   IPI01026158   IPI01026258   IPI01026393   IPI01024766   IPI00374338   IPI00794956   
Protein Interaction databases
DIP (DOE-UCLA)Q8WVM8
IntAct (EBI)Q8WVM8
FunCoupENSG00000092108
BioGRIDSCFD1
STRING (EMBL)SCFD1
ZODIACSCFD1
Ontologies - Pathways
QuickGOQ8WVM8
Ontology : AmiGOcell morphogenesis  response to hypoxia  protein binding  endoplasmic reticulum membrane  Golgi-associated vesicle  cis-Golgi network  cytosol  plasma membrane  retrograde vesicle-mediated transport, Golgi to ER  post-Golgi vesicle-mediated transport  vesicle docking involved in exocytosis  phagocytosis  response to toxic substance  protein transport  Golgi transport complex  syntaxin binding  SNARE complex  Golgi cisterna membrane  protein N-terminus binding  COPII vesicle coating  regulation of protein transport  regulation of ER to Golgi vesicle-mediated transport  toxin transport  negative regulation of autophagosome assembly  
Ontology : EGO-EBIcell morphogenesis  response to hypoxia  protein binding  endoplasmic reticulum membrane  Golgi-associated vesicle  cis-Golgi network  cytosol  plasma membrane  retrograde vesicle-mediated transport, Golgi to ER  post-Golgi vesicle-mediated transport  vesicle docking involved in exocytosis  phagocytosis  response to toxic substance  protein transport  Golgi transport complex  syntaxin binding  SNARE complex  Golgi cisterna membrane  protein N-terminus binding  COPII vesicle coating  regulation of protein transport  regulation of ER to Golgi vesicle-mediated transport  toxin transport  negative regulation of autophagosome assembly  
NDEx NetworkSCFD1
Atlas of Cancer Signalling NetworkSCFD1
Wikipedia pathwaysSCFD1
Orthology - Evolution
OrthoDB23256
GeneTree (enSembl)ENSG00000092108
Phylogenetic Trees/Animal Genes : TreeFamSCFD1
HOVERGENQ8WVM8
HOGENOMQ8WVM8
Homologs : HomoloGeneSCFD1
Homology/Alignments : Family Browser (UCSC)SCFD1
Gene fusions - Rearrangements
Fusion: TCGADHRS4 SCFD1
Fusion: TCGANUBPL SCFD1
Fusion: TCGAFRMD6 SCFD1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSCFD1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SCFD1
dbVarSCFD1
ClinVarSCFD1
1000_GenomesSCFD1 
Exome Variant ServerSCFD1
ExAC (Exome Aggregation Consortium)SCFD1 (select the gene name)
Genetic variants : HAPMAP23256
Genomic Variants (DGV)SCFD1 [DGVbeta]
DECIPHERSCFD1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSCFD1 
Mutations
ICGC Data PortalSCFD1 
TCGA Data PortalSCFD1 
Broad Tumor PortalSCFD1
OASIS PortalSCFD1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSCFD1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSCFD1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SCFD1
DgiDB (Drug Gene Interaction Database)SCFD1
DoCM (Curated mutations)SCFD1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SCFD1 (select a term)
intoGenSCFD1
Cancer3DSCFD1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenSCFD1
Genetic Testing Registry SCFD1
NextProtQ8WVM8 [Medical]
TSGene23256
GENETestsSCFD1
Target ValidationSCFD1
Huge Navigator SCFD1 [HugePedia]
snp3D : Map Gene to Disease23256
BioCentury BCIQSCFD1
ClinGenSCFD1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD23256
Chemical/Pharm GKB GenePA134946073
Clinical trialSCFD1
Miscellaneous
canSAR (ICR)SCFD1 (select the gene name)
Probes
Litterature
PubMed38 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSCFD1
EVEXSCFD1
GoPubMedSCFD1
iHOPSCFD1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:37:19 CEST 2017

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