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SCG3 (secretogranin III)

Identity

Alias_symbol (synonym)SgIII
FLJ90833
Other aliasSGIII
HGNC (Hugo) SCG3
LocusID (NCBI) 29106
Atlas_Id 50553
Location 15q21.2  [Link to chromosome band 15q21]
Location_base_pair Starts at 51973550 and ends at 52013223 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
SCG3 (15q21.2) / ITGB3 (17q21.32)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SCG3   13707
Cards
Entrez_Gene (NCBI)SCG3  29106  secretogranin III
AliasesSGIII
GeneCards (Weizmann)SCG3
Ensembl hg19 (Hinxton)ENSG00000104112 [Gene_View]  chr15:51973550-52013223 [Contig_View]  SCG3 [Vega]
Ensembl hg38 (Hinxton)ENSG00000104112 [Gene_View]  chr15:51973550-52013223 [Contig_View]  SCG3 [Vega]
ICGC DataPortalENSG00000104112
TCGA cBioPortalSCG3
AceView (NCBI)SCG3
Genatlas (Paris)SCG3
WikiGenes29106
SOURCE (Princeton)SCG3
Genetics Home Reference (NIH)SCG3
Genomic and cartography
GoldenPath hg19 (UCSC)SCG3  -     chr15:51973550-52013223 +  15q21.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SCG3  -     15q21.2   [Description]    (hg38-Dec_2013)
EnsemblSCG3 - 15q21.2 [CytoView hg19]  SCG3 - 15q21.2 [CytoView hg38]
Mapping of homologs : NCBISCG3 [Mapview hg19]  SCG3 [Mapview hg38]
OMIM611796   
Gene and transcription
Genbank (Entrez)AF078851 AF453583 AK075314 AK290175 AK296466
RefSeq transcript (Entrez)NM_001165257 NM_013243
RefSeq genomic (Entrez)NC_000015 NC_018926 NG_013214 NT_010194 NW_004929398
Consensus coding sequences : CCDS (NCBI)SCG3
Cluster EST : UnigeneHs.232618 [ NCBI ]
CGAP (NCI)Hs.232618
Alternative Splicing GalleryENSG00000104112
Gene ExpressionSCG3 [ NCBI-GEO ]   SCG3 [ EBI - ARRAY_EXPRESS ]   SCG3 [ SEEK ]   SCG3 [ MEM ]
Gene Expression Viewer (FireBrowse)SCG3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)29106
GTEX Portal (Tissue expression)SCG3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8WXD2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8WXD2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8WXD2
Splice isoforms : SwissVarQ8WXD2
PhosPhoSitePlusQ8WXD2
Domains : Interpro (EBI)SCG3   
Domain families : Pfam (Sanger)SGIII (PF15467)   
Domain families : Pfam (NCBI)pfam15467   
Conserved Domain (NCBI)SCG3
DMDM Disease mutations29106
Blocks (Seattle)SCG3
SuperfamilyQ8WXD2
Human Protein AtlasENSG00000104112
Peptide AtlasQ8WXD2
HPRD11538
IPIIPI00292071   IPI00945317   
Protein Interaction databases
DIP (DOE-UCLA)Q8WXD2
IntAct (EBI)Q8WXD2
FunCoupENSG00000104112
BioGRIDSCG3
STRING (EMBL)SCG3
ZODIACSCG3
Ontologies - Pathways
QuickGOQ8WXD2
Ontology : AmiGOplatelet degranulation  extracellular region  transport vesicle membrane  cytoplasmic vesicle  secretory granule lumen  poly(A) RNA binding  
Ontology : EGO-EBIplatelet degranulation  extracellular region  transport vesicle membrane  cytoplasmic vesicle  secretory granule lumen  poly(A) RNA binding  
NDEx NetworkSCG3
Atlas of Cancer Signalling NetworkSCG3
Wikipedia pathwaysSCG3
Orthology - Evolution
OrthoDB29106
GeneTree (enSembl)ENSG00000104112
Phylogenetic Trees/Animal Genes : TreeFamSCG3
HOVERGENQ8WXD2
HOGENOMQ8WXD2
Homologs : HomoloGeneSCG3
Homology/Alignments : Family Browser (UCSC)SCG3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSCG3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SCG3
dbVarSCG3
ClinVarSCG3
1000_GenomesSCG3 
Exome Variant ServerSCG3
ExAC (Exome Aggregation Consortium)SCG3 (select the gene name)
Genetic variants : HAPMAP29106
Genomic Variants (DGV)SCG3 [DGVbeta]
DECIPHER (Syndromes)15:51973550-52013223  ENSG00000104112
CONAN: Copy Number AnalysisSCG3 
Mutations
ICGC Data PortalSCG3 
TCGA Data PortalSCG3 
Broad Tumor PortalSCG3
OASIS PortalSCG3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSCG3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSCG3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SCG3
DgiDB (Drug Gene Interaction Database)SCG3
DoCM (Curated mutations)SCG3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SCG3 (select a term)
intoGenSCG3
Cancer3DSCG3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611796   
Orphanet
MedgenSCG3
Genetic Testing Registry SCG3
NextProtQ8WXD2 [Medical]
TSGene29106
GENETestsSCG3
Huge Navigator SCG3 [HugePedia]
snp3D : Map Gene to Disease29106
BioCentury BCIQSCG3
ClinGenSCG3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD29106
Chemical/Pharm GKB GenePA34988
Clinical trialSCG3
Miscellaneous
canSAR (ICR)SCG3 (select the gene name)
Probes
Litterature
PubMed26 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSCG3
EVEXSCG3
GoPubMedSCG3
iHOPSCG3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:18:27 CEST 2017

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