Atlas of Genetics and Cytogenetics in Oncology and Haematology


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SCGB1B2P (secretoglobin family 1B member 2, pseudogene)

Identity

Alias_symbol (synonym)SCGB4A1P
Other alias
HGNC (Hugo) SCGB1B2P
LocusID (NCBI) 643719
Atlas_Id 73034
Location 19q13.11  [Link to chromosome band 19q13]
Location_base_pair Starts at 34576733 and ends at 34677031 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SCGB1B2P   20741
Cards
Entrez_Gene (NCBI)SCGB1B2P  643719  secretoglobin family 1B member 2, pseudogene
AliasesSCGB4A1P
GeneCards (Weizmann)SCGB1B2P
Ensembl hg19 (Hinxton)ENSG00000268751 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000268751 [Gene_View]  chr19:34576733-34677031 [Contig_View]  SCGB1B2P [Vega]
ICGC DataPortalENSG00000268751
TCGA cBioPortalSCGB1B2P
AceView (NCBI)SCGB1B2P
Genatlas (Paris)SCGB1B2P
WikiGenes643719
SOURCE (Princeton)SCGB1B2P
Genetics Home Reference (NIH)SCGB1B2P
Genomic and cartography
GoldenPath hg38 (UCSC)SCGB1B2P  -     chr19:34576733-34677031 -  19q13.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SCGB1B2P  -     19q13.11   [Description]    (hg19-Feb_2009)
EnsemblSCGB1B2P - 19q13.11 [CytoView hg19]  SCGB1B2P - 19q13.11 [CytoView hg38]
Mapping of homologs : NCBISCGB1B2P [Mapview hg19]  SCGB1B2P [Mapview hg38]
Gene and transcription
Genbank (Entrez)CA429783 CD173361
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SCGB1B2P
Cluster EST : UnigeneHs.686754 [ NCBI ]
CGAP (NCI)Hs.686754
Alternative Splicing GalleryENSG00000268751
Gene ExpressionSCGB1B2P [ NCBI-GEO ]   SCGB1B2P [ EBI - ARRAY_EXPRESS ]   SCGB1B2P [ SEEK ]   SCGB1B2P [ MEM ]
Gene Expression Viewer (FireBrowse)SCGB1B2P [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)643719
GTEX Portal (Tissue expression)SCGB1B2P
Human Protein AtlasENSG00000268751-SCGB1B2P [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SCGB1B2P
DMDM Disease mutations643719
Blocks (Seattle)SCGB1B2P
Human Protein Atlas [tissue]ENSG00000268751-SCGB1B2P [tissue]
Protein Interaction databases
FunCoupENSG00000268751
BioGRIDSCGB1B2P
STRING (EMBL)SCGB1B2P
ZODIACSCGB1B2P
Ontologies - Pathways
Huge Navigator SCGB1B2P [HugePedia]
snp3D : Map Gene to Disease643719
BioCentury BCIQSCGB1B2P
ClinGenSCGB1B2P
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD643719
Clinical trialSCGB1B2P
Miscellaneous
canSAR (ICR)SCGB1B2P (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSCGB1B2P
EVEXSCGB1B2P
GoPubMedSCGB1B2P
iHOPSCGB1B2P
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:39:50 CET 2017

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