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SCGB1C1 (secretoglobin family 1C member 1)

Identity

Alias_symbol (synonym)RYD5
Other alias
HGNC (Hugo) SCGB1C1
LocusID (NCBI) 147199
Atlas_Id 73035
Location 11p15.5  [Link to chromosome band 11p15]
Location_base_pair Starts at 193080 and ends at 194573 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
MKL1 (22q13.1) / SCGB1C1 (11p15.5)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SCGB1C1   18394
Cards
Entrez_Gene (NCBI)SCGB1C1  147199  secretoglobin family 1C member 1
AliasesRYD5
GeneCards (Weizmann)SCGB1C1
Ensembl hg19 (Hinxton)ENSG00000188076 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000188076 [Gene_View]  chr11:193080-194573 [Contig_View]  SCGB1C1 [Vega]
ICGC DataPortalENSG00000188076
TCGA cBioPortalSCGB1C1
AceView (NCBI)SCGB1C1
Genatlas (Paris)SCGB1C1
WikiGenes147199
SOURCE (Princeton)SCGB1C1
Genetics Home Reference (NIH)SCGB1C1
Genomic and cartography
GoldenPath hg38 (UCSC)SCGB1C1  -     chr11:193080-194573 +  11p15.5   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SCGB1C1  -     11p15.5   [Description]    (hg19-Feb_2009)
EnsemblSCGB1C1 - 11p15.5 [CytoView hg19]  SCGB1C1 - 11p15.5 [CytoView hg38]
Mapping of homologs : NCBISCGB1C1 [Mapview hg19]  SCGB1C1 [Mapview hg38]
OMIM610176   
Gene and transcription
Genbank (Entrez)AM392647 AM393773 AM393805 AY026938 BC069287
RefSeq transcript (Entrez)NM_145651
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SCGB1C1
Cluster EST : UnigeneHs.127059 [ NCBI ]
CGAP (NCI)Hs.127059
Alternative Splicing GalleryENSG00000188076
Gene ExpressionSCGB1C1 [ NCBI-GEO ]   SCGB1C1 [ EBI - ARRAY_EXPRESS ]   SCGB1C1 [ SEEK ]   SCGB1C1 [ MEM ]
Gene Expression Viewer (FireBrowse)SCGB1C1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)147199
GTEX Portal (Tissue expression)SCGB1C1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8TD33   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8TD33  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8TD33
Splice isoforms : SwissVarQ8TD33
PhosPhoSitePlusQ8TD33
Domaine pattern : Prosite (Expaxy)SCGB (PS51311)   
Domains : Interpro (EBI)Secretoglobin    Secretoglobin_1C1/2   
Domain families : Pfam (Sanger)Uteroglobin (PF01099)   
Domain families : Pfam (NCBI)pfam01099   
Conserved Domain (NCBI)SCGB1C1
DMDM Disease mutations147199
Blocks (Seattle)SCGB1C1
SuperfamilyQ8TD33
Human Protein AtlasENSG00000188076
Peptide AtlasQ8TD33
HPRD18024
IPIIPI00967312   
Protein Interaction databases
DIP (DOE-UCLA)Q8TD33
IntAct (EBI)Q8TD33
FunCoupENSG00000188076
BioGRIDSCGB1C1
STRING (EMBL)SCGB1C1
ZODIACSCGB1C1
Ontologies - Pathways
QuickGOQ8TD33
Ontology : AmiGOextracellular region  
Ontology : EGO-EBIextracellular region  
NDEx NetworkSCGB1C1
Atlas of Cancer Signalling NetworkSCGB1C1
Wikipedia pathwaysSCGB1C1
Orthology - Evolution
OrthoDB147199
GeneTree (enSembl)ENSG00000188076
Phylogenetic Trees/Animal Genes : TreeFamSCGB1C1
HOVERGENQ8TD33
HOGENOMQ8TD33
Homologs : HomoloGeneSCGB1C1
Homology/Alignments : Family Browser (UCSC)SCGB1C1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSCGB1C1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SCGB1C1
dbVarSCGB1C1
ClinVarSCGB1C1
1000_GenomesSCGB1C1 
Exome Variant ServerSCGB1C1
ExAC (Exome Aggregation Consortium)SCGB1C1 (select the gene name)
Genetic variants : HAPMAP147199
Genomic Variants (DGV)SCGB1C1 [DGVbeta]
DECIPHERSCGB1C1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSCGB1C1 
Mutations
ICGC Data PortalSCGB1C1 
TCGA Data PortalSCGB1C1 
Broad Tumor PortalSCGB1C1
OASIS PortalSCGB1C1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSCGB1C1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSCGB1C1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SCGB1C1
DgiDB (Drug Gene Interaction Database)SCGB1C1
DoCM (Curated mutations)SCGB1C1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SCGB1C1 (select a term)
intoGenSCGB1C1
Cancer3DSCGB1C1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610176   
Orphanet
MedgenSCGB1C1
Genetic Testing Registry SCGB1C1
NextProtQ8TD33 [Medical]
TSGene147199
GENETestsSCGB1C1
Target ValidationSCGB1C1
Huge Navigator SCGB1C1 [HugePedia]
snp3D : Map Gene to Disease147199
BioCentury BCIQSCGB1C1
ClinGenSCGB1C1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD147199
Chemical/Pharm GKB GenePA134928324
Clinical trialSCGB1C1
Miscellaneous
canSAR (ICR)SCGB1C1 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSCGB1C1
EVEXSCGB1C1
GoPubMedSCGB1C1
iHOPSCGB1C1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:40:05 CEST 2017

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