Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

SCGB1C2 (secretoglobin, family 1C, member 2)

Identity

Other alias-
HGNC (Hugo) SCGB1C2
LocusID (NCBI) 653486
Atlas_Id 73036
Location 11p15.5  [Link to chromosome band 11p15]
Location_base_pair Starts at 193080 and ends at 194500 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SCGB1C2   51242
Cards
Entrez_Gene (NCBI)SCGB1C2  653486  secretoglobin, family 1C, member 2
Aliases
GeneCards (Weizmann)SCGB1C2
Ensembl hg19 (Hinxton) [Gene_View]  chr11:193080-194500 [Contig_View]  SCGB1C2 [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chr11:193080-194500 [Contig_View]  SCGB1C2 [Vega]
TCGA cBioPortalSCGB1C2
AceView (NCBI)SCGB1C2
Genatlas (Paris)SCGB1C2
WikiGenes653486
SOURCE (Princeton)SCGB1C2
Genetics Home Reference (NIH)SCGB1C2
Genomic and cartography
GoldenPath hg19 (UCSC)SCGB1C2  -     chr11:193080-194500 +  11p15.5   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SCGB1C2  -     11p15.5   [Description]    (hg38-Dec_2013)
EnsemblSCGB1C2 - 11p15.5 [CytoView hg19]  SCGB1C2 - 11p15.5 [CytoView hg38]
Mapping of homologs : NCBISCGB1C2 [Mapview hg19]  SCGB1C2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001097610
RefSeq genomic (Entrez)NC_000017 NT_024972 NW_003315952
Consensus coding sequences : CCDS (NCBI)SCGB1C2
Cluster EST : UnigeneHs.127059 [ NCBI ]
CGAP (NCI)Hs.127059
Gene ExpressionSCGB1C2 [ NCBI-GEO ]   SCGB1C2 [ EBI - ARRAY_EXPRESS ]   SCGB1C2 [ SEEK ]   SCGB1C2 [ MEM ]
Gene Expression Viewer (FireBrowse)SCGB1C2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)653486
GTEX Portal (Tissue expression)SCGB1C2
Protein : pattern, domain, 3D structure
UniProt/SwissProtP0DMR2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP0DMR2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP0DMR2
Splice isoforms : SwissVarP0DMR2
PhosPhoSitePlusP0DMR2
Domaine pattern : Prosite (Expaxy)SCGB (PS51311)   
Domains : Interpro (EBI)Secretoglobin    Secretoglobin_1C1/2   
Domain families : Pfam (Sanger)Uteroglobin (PF01099)   
Domain families : Pfam (NCBI)pfam01099   
Conserved Domain (NCBI)SCGB1C2
DMDM Disease mutations653486
Blocks (Seattle)SCGB1C2
SuperfamilyP0DMR2
Peptide AtlasP0DMR2
Protein Interaction databases
DIP (DOE-UCLA)P0DMR2
IntAct (EBI)P0DMR2
BioGRIDSCGB1C2
STRING (EMBL)SCGB1C2
ZODIACSCGB1C2
Ontologies - Pathways
QuickGOP0DMR2
Ontology : AmiGOextracellular region  
Ontology : EGO-EBIextracellular region  
NDEx NetworkSCGB1C2
Atlas of Cancer Signalling NetworkSCGB1C2
Wikipedia pathwaysSCGB1C2
Orthology - Evolution
OrthoDB653486
Phylogenetic Trees/Animal Genes : TreeFamSCGB1C2
HOVERGENP0DMR2
HOGENOMP0DMR2
Homologs : HomoloGeneSCGB1C2
Homology/Alignments : Family Browser (UCSC)SCGB1C2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSCGB1C2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SCGB1C2
dbVarSCGB1C2
ClinVarSCGB1C2
1000_GenomesSCGB1C2 
Exome Variant ServerSCGB1C2
ExAC (Exome Aggregation Consortium)SCGB1C2 (select the gene name)
Genetic variants : HAPMAP653486
Genomic Variants (DGV)SCGB1C2 [DGVbeta]
DECIPHER (Syndromes)11:193080-194500  
CONAN: Copy Number AnalysisSCGB1C2 
Mutations
ICGC Data PortalSCGB1C2 
TCGA Data PortalSCGB1C2 
Broad Tumor PortalSCGB1C2
OASIS PortalSCGB1C2 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDSCGB1C2
BioMutasearch SCGB1C2
DgiDB (Drug Gene Interaction Database)SCGB1C2
DoCM (Curated mutations)SCGB1C2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SCGB1C2 (select a term)
intoGenSCGB1C2
Cancer3DSCGB1C2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenSCGB1C2
Genetic Testing Registry SCGB1C2
NextProtP0DMR2 [Medical]
TSGene653486
GENETestsSCGB1C2
Huge Navigator SCGB1C2 [HugePedia]
snp3D : Map Gene to Disease653486
BioCentury BCIQSCGB1C2
ClinGenSCGB1C2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD653486
Clinical trialSCGB1C2
Miscellaneous
canSAR (ICR)SCGB1C2 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSCGB1C2
EVEXSCGB1C2
GoPubMedSCGB1C2
iHOPSCGB1C2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:42:31 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.