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SCGB1D1 (secretoglobin, family 1D, member 1)

Identity

Other namesLIPA
LPHA
LPNA
HGNC (Hugo) SCGB1D1
LocusID (NCBI) 10648
Location 11q12.3
Location_base_pair Starts at 61957710 and ends at 61961009 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)SCGB1D1   18395
Entrez_Gene (NCBI)SCGB1D1  10648  secretoglobin, family 1D, member 1
Cards
GeneCards (Weizmann)SCGB1D1
Ensembl (Hinxton)ENSG00000168515 [Gene_View]  chr11:61957710-61961009 [Contig_View]  SCGB1D1 [Vega]
AceView (NCBI)SCGB1D1
Genatlas (Paris)SCGB1D1
SOURCE (Stanford)NM_006552
Genomic and cartography
GoldenPath (UCSC)SCGB1D1  -  11q12.3   chr11:61957710-61961009 +  11q12.3   [Description]    (hg19-Feb_2009)
EnsemblSCGB1D1 - 11q12.3 [CytoView]
Mapping of homologs : NCBISCGB1D1 [Mapview]
OMIM615060   
Gene and transcription
Genbank (Entrez)AJ224171 BC062693 BC069170 BC069289
RefSeq transcript (SRS)NM_006552
RefSeq transcript (Entrez)NM_006552
RefSeq genomic (SRS)AC_000143 NC_000011 NC_018922 NT_167190 NW_001838024 NW_004078072
RefSeq genomic (Entrez)AC_000143 NC_000011 NC_018922 NT_167190 NW_001838024 NW_004078072
Consensus coding sequences : CCDS (NCBI)SCGB1D1
Cluster EST : UnigeneHs.202686 [ SRS ] Hs.202686 [ NCBI ]
CGAP (NCI)Hs.202686
Alternative Splicing : Fast-db (Paris)GSHG0004915
Alternative Splicing GalleryENSG00000168515
Gene ExpressionSCGB1D1 [ NCBI-GEO ]   SCGB1D1 [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO95968 (SRS) O95968 (Uniprot)
NextProtO95968
With graphics : InterProO95968
Splice isoforms : SwissVarO95968(Swissvar)
Domaine pattern : Prosite (SRS)SCGB (PS51311)   
Domaine pattern : Prosite (Expaxy)SCGB (PS51311)   
Domains : Interpro (SRS)Secretoglobin    Uteroglobin-like_fam    Uteroglobin-like_superfam   
Domains : Interpro (EBI)Secretoglobin    Uteroglobin-like_fam    Uteroglobin-like_superfam   
Related proteins : CluSTrO95968
Domain families : Pfam (SRS)Uteroglobin (PF01099)   
Domain families : Pfam (Sanger)Uteroglobin (PF01099)   
Domain families : Pfam (NCBI)pfam01099   
Domain families : Smart (EMBL)UTG (SM00096)  
DMDM10648
Blocks (Seattle)O95968
Human Protein AtlasENSG00000168515
HPRD18025
IPIIPI00001468   
Protein Interaction databases
DIP (DOE-UCLA)O95968
IntAct (EBI)O95968
FunCoupENSG00000168515
REACTOMESCGB1D1
Protein Interaction Database10648
BioGRIDSCGB1D1
InParanoidO95968
Interologous Interaction database O95968
IntegromeDBSCGB1D1
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)SCGB1D1
SNP (GeneSNP Utah)SCGB1D1
SNP : HGBaseSCGB1D1
Genetic variants : HAPMAPSCGB1D1
Somatic Mutations in Cancer : COSMICSCGB1D1 
CONAN: Copy Number AnalysisSCGB1D1 
Mutations and Diseases : HGMDSCGB1D1
OMIM615060   
GENETests615060   
Disease Genetic AssociationSCGB1D1
Huge Navigator SCGB1D1 [HugePedia]  SCGB1D1 [HugeCancerGEM]
Genomic VariantsSCGB1D1  SCGB1D1 [DGVbeta]
ClinVarSCGB1D1
snp3D : Map Gene to Disease10648
General knowledge
Homologs : HomoloGeneSCGB1D1
Homology/Alignments : Family Browser (UCSC)SCGB1D1
Phylogenetic Trees/Animal Genes : TreeFamSCGB1D1
Chemical/Protein Interactions : CTD10648
Chemical/Pharm GKB GenePA34990
Clinical trialSCGB1D1
Cancer Resource (Charite)ENSG00000168515
Ontology : AmiGOextracellular space  
Ontology : EGO-EBIextracellular space  
Other databases
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
PubGeneSCGB1D1
iHOPSCGB1D1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri Jun 14 17:35:17 CEST 2013
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