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SCGB1D2 (secretoglobin family 1D member 2)

Identity

Alias_symbol (synonym)LPHB
LIPB
Other aliasLPNB
HGNC (Hugo) SCGB1D2
LocusID (NCBI) 10647
Atlas_Id 42211
Location 11q12.3  [Link to chromosome band 11q12]
Location_base_pair Starts at 62242252 and ends at 62244808 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
SCGB1D2 (11q12.3) / IQGAP1 (15q26.1)SCGB1D2 11q12.3 / IQGAP1 15q26.1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SCGB1D2   18396
Cards
Entrez_Gene (NCBI)SCGB1D2  10647  secretoglobin family 1D member 2
AliasesLIPB; LPHB; LPNB
GeneCards (Weizmann)SCGB1D2
Ensembl hg19 (Hinxton)ENSG00000124935 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000124935 [Gene_View]  chr11:62242252-62244808 [Contig_View]  SCGB1D2 [Vega]
ICGC DataPortalENSG00000124935
TCGA cBioPortalSCGB1D2
AceView (NCBI)SCGB1D2
Genatlas (Paris)SCGB1D2
WikiGenes10647
SOURCE (Princeton)SCGB1D2
Genetics Home Reference (NIH)SCGB1D2
Genomic and cartography
GoldenPath hg38 (UCSC)SCGB1D2  -     chr11:62242252-62244808 +  11q12.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SCGB1D2  -     11q12.3   [Description]    (hg19-Feb_2009)
EnsemblSCGB1D2 - 11q12.3 [CytoView hg19]  SCGB1D2 - 11q12.3 [CytoView hg38]
Mapping of homologs : NCBISCGB1D2 [Mapview hg19]  SCGB1D2 [Mapview hg38]
OMIM615061   
Gene and transcription
Genbank (Entrez)AJ224172 AL708956 BC069290 BC104838 BC104840
RefSeq transcript (Entrez)NM_006551
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SCGB1D2
Cluster EST : UnigeneHs.204096 [ NCBI ]
CGAP (NCI)Hs.204096
Alternative Splicing GalleryENSG00000124935
Gene ExpressionSCGB1D2 [ NCBI-GEO ]   SCGB1D2 [ EBI - ARRAY_EXPRESS ]   SCGB1D2 [ SEEK ]   SCGB1D2 [ MEM ]
Gene Expression Viewer (FireBrowse)SCGB1D2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10647
GTEX Portal (Tissue expression)SCGB1D2
Protein : pattern, domain, 3D structure
UniProt/SwissProtO95969   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO95969  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO95969
Splice isoforms : SwissVarO95969
PhosPhoSitePlusO95969
Domaine pattern : Prosite (Expaxy)SCGB (PS51311)   
Domains : Interpro (EBI)Secretoglobin   
Domain families : Pfam (Sanger)Uteroglobin (PF01099)   
Domain families : Pfam (NCBI)pfam01099   
Conserved Domain (NCBI)SCGB1D2
DMDM Disease mutations10647
Blocks (Seattle)SCGB1D2
SuperfamilyO95969
Human Protein AtlasENSG00000124935
Peptide AtlasO95969
HPRD18026
IPIIPI00001469   
Protein Interaction databases
DIP (DOE-UCLA)O95969
IntAct (EBI)O95969
FunCoupENSG00000124935
BioGRIDSCGB1D2
STRING (EMBL)SCGB1D2
ZODIACSCGB1D2
Ontologies - Pathways
QuickGOO95969
Ontology : AmiGOextracellular space  
Ontology : EGO-EBIextracellular space  
NDEx NetworkSCGB1D2
Atlas of Cancer Signalling NetworkSCGB1D2
Wikipedia pathwaysSCGB1D2
Orthology - Evolution
OrthoDB10647
GeneTree (enSembl)ENSG00000124935
Phylogenetic Trees/Animal Genes : TreeFamSCGB1D2
HOVERGENO95969
HOGENOMO95969
Homologs : HomoloGeneSCGB1D2
Homology/Alignments : Family Browser (UCSC)SCGB1D2
Gene fusions - Rearrangements
Fusion : MitelmanSCGB1D2/IQGAP1 [11q12.3/15q26.1]  
Fusion: TCGASCGB1D2 11q12.3 IQGAP1 15q26.1 BRCA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSCGB1D2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SCGB1D2
dbVarSCGB1D2
ClinVarSCGB1D2
1000_GenomesSCGB1D2 
Exome Variant ServerSCGB1D2
ExAC (Exome Aggregation Consortium)SCGB1D2 (select the gene name)
Genetic variants : HAPMAP10647
Genomic Variants (DGV)SCGB1D2 [DGVbeta]
DECIPHERSCGB1D2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSCGB1D2 
Mutations
ICGC Data PortalSCGB1D2 
TCGA Data PortalSCGB1D2 
Broad Tumor PortalSCGB1D2
OASIS PortalSCGB1D2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSCGB1D2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSCGB1D2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SCGB1D2
DgiDB (Drug Gene Interaction Database)SCGB1D2
DoCM (Curated mutations)SCGB1D2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SCGB1D2 (select a term)
intoGenSCGB1D2
Cancer3DSCGB1D2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615061   
Orphanet
MedgenSCGB1D2
Genetic Testing Registry SCGB1D2
NextProtO95969 [Medical]
TSGene10647
GENETestsSCGB1D2
Huge Navigator SCGB1D2 [HugePedia]
snp3D : Map Gene to Disease10647
BioCentury BCIQSCGB1D2
ClinGenSCGB1D2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD10647
Chemical/Pharm GKB GenePA34991
Clinical trialSCGB1D2
Miscellaneous
canSAR (ICR)SCGB1D2 (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSCGB1D2
EVEXSCGB1D2
GoPubMedSCGB1D2
iHOPSCGB1D2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:36:14 CEST 2017

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