Atlas of Genetics and Cytogenetics in Oncology and Haematology


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SCGB1D4 (secretoglobin family 1D member 4)

Identity

Alias_symbol (synonym)IIS
Other alias
HGNC (Hugo) SCGB1D4
LocusID (NCBI) 404552
Atlas_Id 73037
Location 11q12.3  [Link to chromosome band 11q12]
Location_base_pair Starts at 62296282 and ends at 62299064 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SCGB1D4   31748
Cards
Entrez_Gene (NCBI)SCGB1D4  404552  secretoglobin family 1D member 4
AliasesIIS
GeneCards (Weizmann)SCGB1D4
Ensembl hg19 (Hinxton)ENSG00000197745 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000197745 [Gene_View]  chr11:62296282-62299064 [Contig_View]  SCGB1D4 [Vega]
ICGC DataPortalENSG00000197745
TCGA cBioPortalSCGB1D4
AceView (NCBI)SCGB1D4
Genatlas (Paris)SCGB1D4
WikiGenes404552
SOURCE (Princeton)SCGB1D4
Genetics Home Reference (NIH)SCGB1D4
Genomic and cartography
GoldenPath hg38 (UCSC)SCGB1D4  -     chr11:62296282-62299064 -  11q12.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SCGB1D4  -     11q12.3   [Description]    (hg19-Feb_2009)
EnsemblSCGB1D4 - 11q12.3 [CytoView hg19]  SCGB1D4 - 11q12.3 [CytoView hg38]
Mapping of homologs : NCBISCGB1D4 [Mapview hg19]  SCGB1D4 [Mapview hg38]
OMIM615062   
Gene and transcription
Genbank (Entrez)AY236538 AY359052 BC130639 BC130645 HQ258026
RefSeq transcript (Entrez)NM_206998
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SCGB1D4
Cluster EST : UnigeneHs.473247 [ NCBI ]
CGAP (NCI)Hs.473247
Alternative Splicing GalleryENSG00000197745
Gene ExpressionSCGB1D4 [ NCBI-GEO ]   SCGB1D4 [ EBI - ARRAY_EXPRESS ]   SCGB1D4 [ SEEK ]   SCGB1D4 [ MEM ]
Gene Expression Viewer (FireBrowse)SCGB1D4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)404552
GTEX Portal (Tissue expression)SCGB1D4
Human Protein AtlasENSG00000197745-SCGB1D4 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6XE38   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6XE38  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6XE38
Splice isoforms : SwissVarQ6XE38
PhosPhoSitePlusQ6XE38
Domaine pattern : Prosite (Expaxy)SCGB (PS51311)   
Domains : Interpro (EBI)Secretoglobin   
Domain families : Pfam (Sanger)Uteroglobin (PF01099)   
Domain families : Pfam (NCBI)pfam01099   
Conserved Domain (NCBI)SCGB1D4
DMDM Disease mutations404552
Blocks (Seattle)SCGB1D4
SuperfamilyQ6XE38
Human Protein Atlas [tissue]ENSG00000197745-SCGB1D4 [tissue]
Peptide AtlasQ6XE38
HPRD15301
IPIIPI00410158   
Protein Interaction databases
DIP (DOE-UCLA)Q6XE38
IntAct (EBI)Q6XE38
FunCoupENSG00000197745
BioGRIDSCGB1D4
STRING (EMBL)SCGB1D4
ZODIACSCGB1D4
Ontologies - Pathways
QuickGOQ6XE38
Ontology : AmiGOextracellular region  
Ontology : EGO-EBIextracellular region  
NDEx NetworkSCGB1D4
Atlas of Cancer Signalling NetworkSCGB1D4
Wikipedia pathwaysSCGB1D4
Orthology - Evolution
OrthoDB404552
GeneTree (enSembl)ENSG00000197745
Phylogenetic Trees/Animal Genes : TreeFamSCGB1D4
HOVERGENQ6XE38
HOGENOMQ6XE38
Homologs : HomoloGeneSCGB1D4
Homology/Alignments : Family Browser (UCSC)SCGB1D4
Gene fusions - Rearrangements
Tumor Fusion PortalSCGB1D4
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSCGB1D4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SCGB1D4
dbVarSCGB1D4
ClinVarSCGB1D4
1000_GenomesSCGB1D4 
Exome Variant ServerSCGB1D4
ExAC (Exome Aggregation Consortium)ENSG00000197745
GNOMAD BrowserENSG00000197745
Genetic variants : HAPMAP404552
Genomic Variants (DGV)SCGB1D4 [DGVbeta]
DECIPHERSCGB1D4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSCGB1D4 
Mutations
ICGC Data PortalSCGB1D4 
TCGA Data PortalSCGB1D4 
Broad Tumor PortalSCGB1D4
OASIS PortalSCGB1D4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSCGB1D4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSCGB1D4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SCGB1D4
DgiDB (Drug Gene Interaction Database)SCGB1D4
DoCM (Curated mutations)SCGB1D4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SCGB1D4 (select a term)
intoGenSCGB1D4
Cancer3DSCGB1D4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615062   
Orphanet
DisGeNETSCGB1D4
MedgenSCGB1D4
Genetic Testing Registry SCGB1D4
NextProtQ6XE38 [Medical]
TSGene404552
GENETestsSCGB1D4
Target ValidationSCGB1D4
Huge Navigator SCGB1D4 [HugePedia]
snp3D : Map Gene to Disease404552
BioCentury BCIQSCGB1D4
ClinGenSCGB1D4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD404552
Chemical/Pharm GKB GenePA142670946
Clinical trialSCGB1D4
Miscellaneous
canSAR (ICR)SCGB1D4 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSCGB1D4
EVEXSCGB1D4
GoPubMedSCGB1D4
iHOPSCGB1D4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:25:08 CET 2017

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