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SCGB2A1 (secretoglobin family 2A member 1)

Identity

Other namesLPHC
LPNC
MGB2
UGB3
HGNC (Hugo) SCGB2A1
LocusID (NCBI) 4246
Atlas_Id 42212
Location 11q12.3  [Link to chromosome band 11q12]
Location_base_pair Starts at 61976140 and ends at 61981411 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SCGB2A1   7051
Cards
Entrez_Gene (NCBI)SCGB2A1  4246  secretoglobin family 2A member 1
AliasesLPHC; LPNC; MGB2; UGB3
GeneCards (Weizmann)SCGB2A1
Ensembl hg19 (Hinxton)ENSG00000124939 [Gene_View]  chr11:61976140-61981411 [Contig_View]  SCGB2A1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000124939 [Gene_View]  chr11:61976140-61981411 [Contig_View]  SCGB2A1 [Vega]
ICGC DataPortalENSG00000124939
TCGA cBioPortalSCGB2A1
AceView (NCBI)SCGB2A1
Genatlas (Paris)SCGB2A1
WikiGenes4246
SOURCE (Princeton)SCGB2A1
Genomic and cartography
GoldenPath hg19 (UCSC)SCGB2A1  -     chr11:61976140-61981411 +  11q12.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SCGB2A1  -     11q12.3   [Description]    (hg38-Dec_2013)
EnsemblSCGB2A1 - 11q12.3 [CytoView hg19]  SCGB2A1 - 11q12.3 [CytoView hg38]
Mapping of homologs : NCBISCGB2A1 [Mapview hg19]  SCGB2A1 [Mapview hg38]
OMIM604398   
Gene and transcription
Genbank (Entrez)AF071219 AJ224173 BC062218
RefSeq transcript (Entrez)NM_002407
RefSeq genomic (Entrez)NC_000011 NC_018922 NT_167190 NW_004929380
Consensus coding sequences : CCDS (NCBI)SCGB2A1
Cluster EST : UnigeneHs.97644 [ NCBI ]
CGAP (NCI)Hs.97644
Alternative Splicing GalleryENSG00000124939
Gene ExpressionSCGB2A1 [ NCBI-GEO ]   SCGB2A1 [ EBI - ARRAY_EXPRESS ]   SCGB2A1 [ SEEK ]   SCGB2A1 [ MEM ]
Gene Expression Viewer (FireBrowse)SCGB2A1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)4246
GTEX Portal (Tissue expression)SCGB2A1
Protein : pattern, domain, 3D structure
UniProt/SwissProtO75556 (Uniprot)
NextProtO75556  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO75556
Splice isoforms : SwissVarO75556 (Swissvar)
PhosPhoSitePlusO75556
Domaine pattern : Prosite (Expaxy)SCGB (PS51311)   
Domains : Interpro (EBI)Secretoglobin   
Domain families : Pfam (Sanger)Uteroglobin (PF01099)   
Domain families : Pfam (NCBI)pfam01099   
DMDM Disease mutations4246
Blocks (Seattle)SCGB2A1
SuperfamilyO75556
Human Protein AtlasENSG00000124939
Peptide AtlasO75556
HPRD05096
IPIIPI00026126   
Protein Interaction databases
DIP (DOE-UCLA)O75556
IntAct (EBI)O75556
FunCoupENSG00000124939
BioGRIDSCGB2A1
STRING (EMBL)SCGB2A1
ZODIACSCGB2A1
Ontologies - Pathways
QuickGOO75556
Ontology : AmiGOextracellular space  androgen receptor signaling pathway  protein heterodimerization activity  
Ontology : EGO-EBIextracellular space  androgen receptor signaling pathway  protein heterodimerization activity  
NDEx NetworkSCGB2A1
Atlas of Cancer Signalling NetworkSCGB2A1
Wikipedia pathwaysSCGB2A1
Orthology - Evolution
OrthoDB4246
GeneTree (enSembl)ENSG00000124939
Phylogenetic Trees/Animal Genes : TreeFamSCGB2A1
Homologs : HomoloGeneSCGB2A1
Homology/Alignments : Family Browser (UCSC)SCGB2A1
Gene fusions - Rearrangements
Polymorphisms : SNP, variants
NCBI Variation ViewerSCGB2A1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SCGB2A1
dbVarSCGB2A1
ClinVarSCGB2A1
1000_GenomesSCGB2A1 
Exome Variant ServerSCGB2A1
ExAC (Exome Aggregation Consortium)SCGB2A1 (select the gene name)
Genetic variants : HAPMAP4246
Genomic Variants (DGV)SCGB2A1 [DGVbeta]
Mutations
ICGC Data PortalSCGB2A1 
TCGA Data PortalSCGB2A1 
Broad Tumor PortalSCGB2A1
OASIS PortalSCGB2A1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSCGB2A1 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SCGB2A1
DgiDB (Drug Gene Interaction Database)SCGB2A1
DoCM (Curated mutations)SCGB2A1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SCGB2A1 (select a term)
intoGenSCGB2A1
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)11:61976140-61981411  ENSG00000124939
CONAN: Copy Number AnalysisSCGB2A1 
Mutations and Diseases : HGMDSCGB2A1
OMIM604398   
MedgenSCGB2A1
Genetic Testing Registry SCGB2A1
NextProtO75556 [Medical]
TSGene4246
GENETestsSCGB2A1
Huge Navigator SCGB2A1 [HugePedia]
snp3D : Map Gene to Disease4246
BioCentury BCIQSCGB2A1
ClinGenSCGB2A1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD4246
Chemical/Pharm GKB GenePA34992
Clinical trialSCGB2A1
Miscellaneous
canSAR (ICR)SCGB2A1 (select the gene name)
Probes
Litterature
PubMed30 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSCGB2A1
EVEXSCGB2A1
GoPubMedSCGB2A1
iHOPSCGB2A1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 19 19:12:12 CEST 2016

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