Atlas of Genetics and Cytogenetics in Oncology and Haematology


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SCGB2A1 (secretoglobin, family 2A, member 1)

Identity

Other namesLPHC
LPNC
MGB2
UGB3
HGNC (Hugo) SCGB2A1
LocusID (NCBI) 4246
Location 11q12.3
Location_base_pair Starts at 61976140 and ends at 61981411 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)SCGB2A1   7051
Cards
Entrez_Gene (NCBI)SCGB2A1  4246  secretoglobin, family 2A, member 1
GeneCards (Weizmann)SCGB2A1
Ensembl (Hinxton)ENSG00000124939 [Gene_View]  chr11:61976140-61981411 [Contig_View]  SCGB2A1 [Vega]
ICGC DataPortalENSG00000124939
AceView (NCBI)SCGB2A1
Genatlas (Paris)SCGB2A1
WikiGenes4246
SOURCE (Princeton)NM_002407
Genomic and cartography
GoldenPath (UCSC)SCGB2A1  -  11q12.3   chr11:61976140-61981411 +  11q12.3   [Description]    (hg19-Feb_2009)
EnsemblSCGB2A1 - 11q12.3 [CytoView]
Mapping of homologs : NCBISCGB2A1 [Mapview]
OMIM604398   
Gene and transcription
Genbank (Entrez)AF071219 AJ224173 BC062218
RefSeq transcript (Entrez)NM_002407
RefSeq genomic (Entrez)AC_000143 NC_000011 NC_018922 NT_167190 NW_001838024 NW_004929380
Consensus coding sequences : CCDS (NCBI)SCGB2A1
Cluster EST : UnigeneHs.97644 [ NCBI ]
CGAP (NCI)Hs.97644
Alternative Splicing : Fast-db (Paris)GSHG0004916
Alternative Splicing GalleryENSG00000124939
Gene ExpressionSCGB2A1 [ NCBI-GEO ]     SCGB2A1 [ SEEK ]   SCGB2A1 [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO75556 (Uniprot)
NextProtO75556  [Medical]
With graphics : InterProO75556
Splice isoforms : SwissVarO75556 (Swissvar)
Domaine pattern : Prosite (Expaxy)SCGB (PS51311)   
Domains : Interpro (EBI)Secretoglobin   
Related proteins : CluSTrO75556
Domain families : Pfam (Sanger)Uteroglobin (PF01099)   
Domain families : Pfam (NCBI)pfam01099   
DMDM Disease mutations4246
Blocks (Seattle)O75556
Human Protein AtlasENSG00000124939
Peptide AtlasO75556
HPRD05096
IPIIPI00026126   
Protein Interaction databases
DIP (DOE-UCLA)O75556
IntAct (EBI)O75556
FunCoupENSG00000124939
BioGRIDSCGB2A1
IntegromeDBSCGB2A1
STRING (EMBL)SCGB2A1
Ontologies - Pathways
QuickGOO75556
Ontology : AmiGOextracellular space  androgen receptor signaling pathway  protein heterodimerization activity  
Ontology : EGO-EBIextracellular space  androgen receptor signaling pathway  protein heterodimerization activity  
Protein Interaction DatabaseSCGB2A1
Wikipedia pathwaysSCGB2A1
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)SCGB2A1
SNP (GeneSNP Utah)SCGB2A1
SNP : HGBaseSCGB2A1
Genetic variants : HAPMAPSCGB2A1
1000_GenomesSCGB2A1 
ICGC programENSG00000124939 
CONAN: Copy Number AnalysisSCGB2A1 
Somatic Mutations in Cancer : COSMICSCGB2A1 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
DECIPHER (Syndromes)11:61976140-61981411
Mutations and Diseases : HGMDSCGB2A1
OMIM604398   
MedgenSCGB2A1
GENETestsSCGB2A1
Disease Genetic AssociationSCGB2A1
Huge Navigator SCGB2A1 [HugePedia]  SCGB2A1 [HugeCancerGEM]
Genomic VariantsSCGB2A1  SCGB2A1 [DGVbeta]
Exome VariantSCGB2A1
dbVarSCGB2A1
ClinVarSCGB2A1
snp3D : Map Gene to Disease4246
General knowledge
Homologs : HomoloGeneSCGB2A1
Homology/Alignments : Family Browser (UCSC)SCGB2A1
Phylogenetic Trees/Animal Genes : TreeFamSCGB2A1
Chemical/Protein Interactions : CTD4246
Chemical/Pharm GKB GenePA34992
Clinical trialSCGB2A1
Cancer Resource (Charite)ENSG00000124939
Other databases
Probes
Litterature
PubMed24 Pubmed reference(s) in Entrez
CoreMineSCGB2A1
GoPubMedSCGB2A1
iHOPSCGB2A1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Nov 8 17:55:21 CET 2014

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