Atlas of Genetics and Cytogenetics in Oncology and Haematology


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SCGB2A2 (secretoglobin family 2A member 2)

Identity

Alias_namesMGB1
mammaglobin 1
Alias_symbol (synonym)UGB2
MGC71974
Other alias
HGNC (Hugo) SCGB2A2
LocusID (NCBI) 4250
Atlas_Id 42213
Location 11q12.3  [Link to chromosome band 11q12]
Location_base_pair Starts at 62037627 and ends at 62040629 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SCGB2A2   7050
Cards
Entrez_Gene (NCBI)SCGB2A2  4250  secretoglobin family 2A member 2
AliasesMGB1; UGB2
GeneCards (Weizmann)SCGB2A2
Ensembl hg19 (Hinxton)ENSG00000110484 [Gene_View]  chr11:62037627-62040629 [Contig_View]  SCGB2A2 [Vega]
Ensembl hg38 (Hinxton)ENSG00000110484 [Gene_View]  chr11:62037627-62040629 [Contig_View]  SCGB2A2 [Vega]
ICGC DataPortalENSG00000110484
TCGA cBioPortalSCGB2A2
AceView (NCBI)SCGB2A2
Genatlas (Paris)SCGB2A2
WikiGenes4250
SOURCE (Princeton)SCGB2A2
Genetics Home Reference (NIH)SCGB2A2
Genomic and cartography
GoldenPath hg19 (UCSC)SCGB2A2  -     chr11:62037627-62040629 +  11q12.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SCGB2A2  -     11q12.3   [Description]    (hg38-Dec_2013)
EnsemblSCGB2A2 - 11q12.3 [CytoView hg19]  SCGB2A2 - 11q12.3 [CytoView hg38]
Mapping of homologs : NCBISCGB2A2 [Mapview hg19]  SCGB2A2 [Mapview hg38]
OMIM605562   
Gene and transcription
Genbank (Entrez)AI904278 AY217100 BC067220 BC128252 BC128402
RefSeq transcript (Entrez)NM_002411
RefSeq genomic (Entrez)NC_000011 NC_018922 NT_167190 NW_004929380
Consensus coding sequences : CCDS (NCBI)SCGB2A2
Cluster EST : UnigeneHs.46452 [ NCBI ]
CGAP (NCI)Hs.46452
Alternative Splicing GalleryENSG00000110484
Gene ExpressionSCGB2A2 [ NCBI-GEO ]   SCGB2A2 [ EBI - ARRAY_EXPRESS ]   SCGB2A2 [ SEEK ]   SCGB2A2 [ MEM ]
Gene Expression Viewer (FireBrowse)SCGB2A2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)4250
GTEX Portal (Tissue expression)SCGB2A2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ13296   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ13296  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ13296
Splice isoforms : SwissVarQ13296
PhosPhoSitePlusQ13296
Domaine pattern : Prosite (Expaxy)SCGB (PS51311)   
Domains : Interpro (EBI)Secretoglobin   
Domain families : Pfam (Sanger)Uteroglobin (PF01099)   
Domain families : Pfam (NCBI)pfam01099   
Domain families : Smart (EMBL)UTG (SM00096)  
Conserved Domain (NCBI)SCGB2A2
DMDM Disease mutations4250
Blocks (Seattle)SCGB2A2
SuperfamilyQ13296
Human Protein AtlasENSG00000110484
Peptide AtlasQ13296
HPRD05712
IPIIPI00012476   IPI00398870   IPI00433192   
Protein Interaction databases
DIP (DOE-UCLA)Q13296
IntAct (EBI)Q13296
FunCoupENSG00000110484
BioGRIDSCGB2A2
STRING (EMBL)SCGB2A2
ZODIACSCGB2A2
Ontologies - Pathways
QuickGOQ13296
Ontology : AmiGOmolecular_function  protein binding  cellular_component  biological_process  
Ontology : EGO-EBImolecular_function  protein binding  cellular_component  biological_process  
NDEx NetworkSCGB2A2
Atlas of Cancer Signalling NetworkSCGB2A2
Wikipedia pathwaysSCGB2A2
Orthology - Evolution
OrthoDB4250
GeneTree (enSembl)ENSG00000110484
Phylogenetic Trees/Animal Genes : TreeFamSCGB2A2
HOVERGENQ13296
HOGENOMQ13296
Homologs : HomoloGeneSCGB2A2
Homology/Alignments : Family Browser (UCSC)SCGB2A2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSCGB2A2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SCGB2A2
dbVarSCGB2A2
ClinVarSCGB2A2
1000_GenomesSCGB2A2 
Exome Variant ServerSCGB2A2
ExAC (Exome Aggregation Consortium)SCGB2A2 (select the gene name)
Genetic variants : HAPMAP4250
Genomic Variants (DGV)SCGB2A2 [DGVbeta]
DECIPHER (Syndromes)11:62037627-62040629  ENSG00000110484
CONAN: Copy Number AnalysisSCGB2A2 
Mutations
ICGC Data PortalSCGB2A2 
TCGA Data PortalSCGB2A2 
Broad Tumor PortalSCGB2A2
OASIS PortalSCGB2A2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSCGB2A2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSCGB2A2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SCGB2A2
DgiDB (Drug Gene Interaction Database)SCGB2A2
DoCM (Curated mutations)SCGB2A2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SCGB2A2 (select a term)
intoGenSCGB2A2
Cancer3DSCGB2A2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM605562   
Orphanet
MedgenSCGB2A2
Genetic Testing Registry SCGB2A2
NextProtQ13296 [Medical]
TSGene4250
GENETestsSCGB2A2
Huge Navigator SCGB2A2 [HugePedia]
snp3D : Map Gene to Disease4250
BioCentury BCIQSCGB2A2
ClinGenSCGB2A2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD4250
Chemical/Pharm GKB GenePA34993
Clinical trialSCGB2A2
Miscellaneous
canSAR (ICR)SCGB2A2 (select the gene name)
Probes
Litterature
PubMed56 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSCGB2A2
EVEXSCGB2A2
GoPubMedSCGB2A2
iHOPSCGB2A2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:26:19 CET 2017

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