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SCGB2B2 (secretoglobin family 2B member 2)

Identity

Alias_namesSCGBL
secretoglobin-like
Alias_symbol (synonym)SCGB4A2
Other alias
HGNC (Hugo) SCGB2B2
LocusID (NCBI) 284402
Atlas_Id 73038
Location 19q13.11  [Link to chromosome band 19q13]
Location_base_pair Starts at 34590625 and ends at 34594585 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ZNF260 (19q13.12) / SCGB2B2 (19q13.11)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SCGB2B2   27616
Cards
Entrez_Gene (NCBI)SCGB2B2  284402  secretoglobin family 2B member 2
AliasesSCGB4A2; SCGBL
GeneCards (Weizmann)SCGB2B2
Ensembl hg19 (Hinxton)ENSG00000205209 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000205209 [Gene_View]  chr19:34590625-34594585 [Contig_View]  SCGB2B2 [Vega]
ICGC DataPortalENSG00000205209
TCGA cBioPortalSCGB2B2
AceView (NCBI)SCGB2B2
Genatlas (Paris)SCGB2B2
WikiGenes284402
SOURCE (Princeton)SCGB2B2
Genetics Home Reference (NIH)SCGB2B2
Genomic and cartography
GoldenPath hg38 (UCSC)SCGB2B2  -     chr19:34590625-34594585 -  19q13.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SCGB2B2  -     19q13.11   [Description]    (hg19-Feb_2009)
EnsemblSCGB2B2 - 19q13.11 [CytoView hg19]  SCGB2B2 - 19q13.11 [CytoView hg38]
Mapping of homologs : NCBISCGB2B2 [Mapview hg19]  SCGB2B2 [Mapview hg38]
OMIM615063   
Gene and transcription
Genbank (Entrez)AK093495 AW139287 BC093909 BC093935 BX105421
RefSeq transcript (Entrez)NM_001025591
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SCGB2B2
Cluster EST : UnigeneHs.668903 [ NCBI ]
CGAP (NCI)Hs.668903
Alternative Splicing GalleryENSG00000205209
Gene ExpressionSCGB2B2 [ NCBI-GEO ]   SCGB2B2 [ EBI - ARRAY_EXPRESS ]   SCGB2B2 [ SEEK ]   SCGB2B2 [ MEM ]
Gene Expression Viewer (FireBrowse)SCGB2B2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)284402
GTEX Portal (Tissue expression)SCGB2B2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ4G0G5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ4G0G5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ4G0G5
Splice isoforms : SwissVarQ4G0G5
PhosPhoSitePlusQ4G0G5
Domaine pattern : Prosite (Expaxy)SCGB (PS51311)   
Domains : Interpro (EBI)Secretoglobin   
Domain families : Pfam (Sanger)Uteroglobin (PF01099)   
Domain families : Pfam (NCBI)pfam01099   
Conserved Domain (NCBI)SCGB2B2
DMDM Disease mutations284402
Blocks (Seattle)SCGB2B2
SuperfamilyQ4G0G5
Human Protein AtlasENSG00000205209
Peptide AtlasQ4G0G5
HPRD18770
IPIIPI00401605   
Protein Interaction databases
DIP (DOE-UCLA)Q4G0G5
IntAct (EBI)Q4G0G5
FunCoupENSG00000205209
BioGRIDSCGB2B2
STRING (EMBL)SCGB2B2
ZODIACSCGB2B2
Ontologies - Pathways
QuickGOQ4G0G5
Ontology : AmiGOextracellular region  
Ontology : EGO-EBIextracellular region  
NDEx NetworkSCGB2B2
Atlas of Cancer Signalling NetworkSCGB2B2
Wikipedia pathwaysSCGB2B2
Orthology - Evolution
OrthoDB284402
GeneTree (enSembl)ENSG00000205209
Phylogenetic Trees/Animal Genes : TreeFamSCGB2B2
HOVERGENQ4G0G5
HOGENOMQ4G0G5
Homologs : HomoloGeneSCGB2B2
Homology/Alignments : Family Browser (UCSC)SCGB2B2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSCGB2B2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SCGB2B2
dbVarSCGB2B2
ClinVarSCGB2B2
1000_GenomesSCGB2B2 
Exome Variant ServerSCGB2B2
ExAC (Exome Aggregation Consortium)SCGB2B2 (select the gene name)
Genetic variants : HAPMAP284402
Genomic Variants (DGV)SCGB2B2 [DGVbeta]
DECIPHERSCGB2B2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSCGB2B2 
Mutations
ICGC Data PortalSCGB2B2 
TCGA Data PortalSCGB2B2 
Broad Tumor PortalSCGB2B2
OASIS PortalSCGB2B2 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDSCGB2B2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SCGB2B2
DgiDB (Drug Gene Interaction Database)SCGB2B2
DoCM (Curated mutations)SCGB2B2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SCGB2B2 (select a term)
intoGenSCGB2B2
Cancer3DSCGB2B2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615063   
Orphanet
MedgenSCGB2B2
Genetic Testing Registry SCGB2B2
NextProtQ4G0G5 [Medical]
TSGene284402
GENETestsSCGB2B2
Huge Navigator SCGB2B2 [HugePedia]
snp3D : Map Gene to Disease284402
BioCentury BCIQSCGB2B2
ClinGenSCGB2B2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD284402
Chemical/Pharm GKB GenePA164725574
Clinical trialSCGB2B2
Miscellaneous
canSAR (ICR)SCGB2B2 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSCGB2B2
EVEXSCGB2B2
GoPubMedSCGB2B2
iHOPSCGB2B2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 11:52:24 CEST 2017

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