Atlas of Genetics and Cytogenetics in Oncology and Haematology


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SCGB3A1 (secretoglobin family 3A member 1)

Identity

Alias_symbol (synonym)UGRP2
HIN-1
HIN1
LU105
PnSP-2
Other alias
HGNC (Hugo) SCGB3A1
LocusID (NCBI) 92304
Atlas_Id 42214
Location 5q35.3  [Link to chromosome band 5q35]
Location_base_pair Starts at 180590105 and ends at 180591487 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
LUC7L3 (17q21.33) / SCGB3A1 (5q35.3)SCGB3A1 (5q35.3) / CAST (5q15)SCGB3A1 (5q35.3) / CLIP2 (7q11.23)
SCGB3A1 (5q35.3) / TMEM39B (1p35.1)SUGP1 (19p13.11) / SCGB3A1 (5q35.3)SCGB3A1 5q35.3 / CAST 5q15

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SCGB3A1   18384
Cards
Entrez_Gene (NCBI)SCGB3A1  92304  secretoglobin family 3A member 1
AliasesHIN-1; HIN1; LU105; PnSP-2; 
UGRP2
GeneCards (Weizmann)SCGB3A1
Ensembl hg19 (Hinxton)ENSG00000161055 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000161055 [Gene_View]  chr5:180590105-180591487 [Contig_View]  SCGB3A1 [Vega]
ICGC DataPortalENSG00000161055
TCGA cBioPortalSCGB3A1
AceView (NCBI)SCGB3A1
Genatlas (Paris)SCGB3A1
WikiGenes92304
SOURCE (Princeton)SCGB3A1
Genetics Home Reference (NIH)SCGB3A1
Genomic and cartography
GoldenPath hg38 (UCSC)SCGB3A1  -     chr5:180590105-180591487 -  5q35.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SCGB3A1  -     5q35.3   [Description]    (hg19-Feb_2009)
EnsemblSCGB3A1 - 5q35.3 [CytoView hg19]  SCGB3A1 - 5q35.3 [CytoView hg38]
Mapping of homologs : NCBISCGB3A1 [Mapview hg19]  SCGB3A1 [Mapview hg38]
OMIM606500   
Gene and transcription
Genbank (Entrez)AF086152 AF313458 AF436839 AY040564 AY359064
RefSeq transcript (Entrez)NM_052863
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SCGB3A1
Cluster EST : UnigeneHs.62492 [ NCBI ]
CGAP (NCI)Hs.62492
Alternative Splicing GalleryENSG00000161055
Gene ExpressionSCGB3A1 [ NCBI-GEO ]   SCGB3A1 [ EBI - ARRAY_EXPRESS ]   SCGB3A1 [ SEEK ]   SCGB3A1 [ MEM ]
Gene Expression Viewer (FireBrowse)SCGB3A1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)92304
GTEX Portal (Tissue expression)SCGB3A1
Human Protein AtlasENSG00000161055-SCGB3A1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96QR1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96QR1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96QR1
Splice isoforms : SwissVarQ96QR1
PhosPhoSitePlusQ96QR1
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SCGB3A1
DMDM Disease mutations92304
Blocks (Seattle)SCGB3A1
SuperfamilyQ96QR1
Human Protein Atlas [tissue]ENSG00000161055-SCGB3A1 [tissue]
Peptide AtlasQ96QR1
HPRD05932
IPIIPI00066193   
Protein Interaction databases
DIP (DOE-UCLA)Q96QR1
IntAct (EBI)Q96QR1
FunCoupENSG00000161055
BioGRIDSCGB3A1
STRING (EMBL)SCGB3A1
ZODIACSCGB3A1
Ontologies - Pathways
QuickGOQ96QR1
Ontology : AmiGOcytokine activity  extracellular space  negative regulation of cell growth  regulation of cell proliferation  extracellular exosome  positive regulation of myoblast fusion  
Ontology : EGO-EBIcytokine activity  extracellular space  negative regulation of cell growth  regulation of cell proliferation  extracellular exosome  positive regulation of myoblast fusion  
NDEx NetworkSCGB3A1
Atlas of Cancer Signalling NetworkSCGB3A1
Wikipedia pathwaysSCGB3A1
Orthology - Evolution
OrthoDB92304
GeneTree (enSembl)ENSG00000161055
Phylogenetic Trees/Animal Genes : TreeFamSCGB3A1
HOVERGENQ96QR1
HOGENOMQ96QR1
Homologs : HomoloGeneSCGB3A1
Homology/Alignments : Family Browser (UCSC)SCGB3A1
Gene fusions - Rearrangements
Fusion : MitelmanSCGB3A1/CAST [5q35.3/5q15]  
Fusion: TCGA_MDACCSCGB3A1 5q35.3 CAST 5q15 LUAD
Tumor Fusion PortalSCGB3A1
Fusion Cancer (Beijing)SCGB3A1 [5q35.3]  -  CLIP2 [7q11.23]  [FUSC002592]
Fusion Cancer (Beijing)SUGP1 [19p13.11]  -  SCGB3A1 [5q35.3]  [FUSC002596]
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSCGB3A1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SCGB3A1
dbVarSCGB3A1
ClinVarSCGB3A1
1000_GenomesSCGB3A1 
Exome Variant ServerSCGB3A1
ExAC (Exome Aggregation Consortium)ENSG00000161055
GNOMAD BrowserENSG00000161055
Genetic variants : HAPMAP92304
Genomic Variants (DGV)SCGB3A1 [DGVbeta]
DECIPHERSCGB3A1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSCGB3A1 
Mutations
ICGC Data PortalSCGB3A1 
TCGA Data PortalSCGB3A1 
Broad Tumor PortalSCGB3A1
OASIS PortalSCGB3A1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSCGB3A1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSCGB3A1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SCGB3A1
DgiDB (Drug Gene Interaction Database)SCGB3A1
DoCM (Curated mutations)SCGB3A1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SCGB3A1 (select a term)
intoGenSCGB3A1
Cancer3DSCGB3A1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606500   
Orphanet
DisGeNETSCGB3A1
MedgenSCGB3A1
Genetic Testing Registry SCGB3A1
NextProtQ96QR1 [Medical]
TSGene92304
GENETestsSCGB3A1
Target ValidationSCGB3A1
Huge Navigator SCGB3A1 [HugePedia]
snp3D : Map Gene to Disease92304
BioCentury BCIQSCGB3A1
ClinGenSCGB3A1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD92304
Chemical/Pharm GKB GenePA34994
Clinical trialSCGB3A1
Miscellaneous
canSAR (ICR)SCGB3A1 (select the gene name)
Probes
Litterature
PubMed42 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSCGB3A1
EVEXSCGB3A1
GoPubMedSCGB3A1
iHOPSCGB3A1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 14:33:38 CET 2017

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