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SCGB3A2 (secretoglobin family 3A member 2)

Identity

Alias_symbol (synonym)UGRP1
LU103
PNSP1
Other aliaspnSP-1
HGNC (Hugo) SCGB3A2
LocusID (NCBI) 117156
Atlas_Id 52172
Location 5q32  [Link to chromosome band 5q32]
Location_base_pair Starts at 147258274 and ends at 147261756 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SCGB3A2   18391
Cards
Entrez_Gene (NCBI)SCGB3A2  117156  secretoglobin family 3A member 2
AliasesLU103; PNSP1; UGRP1; pnSP-1
GeneCards (Weizmann)SCGB3A2
Ensembl hg19 (Hinxton)ENSG00000164265 [Gene_View]  chr5:147258274-147261756 [Contig_View]  SCGB3A2 [Vega]
Ensembl hg38 (Hinxton)ENSG00000164265 [Gene_View]  chr5:147258274-147261756 [Contig_View]  SCGB3A2 [Vega]
ICGC DataPortalENSG00000164265
TCGA cBioPortalSCGB3A2
AceView (NCBI)SCGB3A2
Genatlas (Paris)SCGB3A2
WikiGenes117156
SOURCE (Princeton)SCGB3A2
Genetics Home Reference (NIH)SCGB3A2
Genomic and cartography
GoldenPath hg19 (UCSC)SCGB3A2  -     chr5:147258274-147261756 +  5q32   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SCGB3A2  -     5q32   [Description]    (hg38-Dec_2013)
EnsemblSCGB3A2 - 5q32 [CytoView hg19]  SCGB3A2 - 5q32 [CytoView hg38]
Mapping of homologs : NCBISCGB3A2 [Mapview hg19]  SCGB3A2 [Mapview hg38]
OMIM600807   606531   
Gene and transcription
Genbank (Entrez)AA988559 AF313455 AF439545 AY358979 BC024232
RefSeq transcript (Entrez)NM_054023
RefSeq genomic (Entrez)NC_000005 NC_018916 NG_016867 NT_029289 NW_004929324
Consensus coding sequences : CCDS (NCBI)SCGB3A2
Cluster EST : UnigeneHs.483765 [ NCBI ]
CGAP (NCI)Hs.483765
Alternative Splicing GalleryENSG00000164265
Gene ExpressionSCGB3A2 [ NCBI-GEO ]   SCGB3A2 [ EBI - ARRAY_EXPRESS ]   SCGB3A2 [ SEEK ]   SCGB3A2 [ MEM ]
Gene Expression Viewer (FireBrowse)SCGB3A2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)117156
GTEX Portal (Tissue expression)SCGB3A2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96PL1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96PL1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96PL1
Splice isoforms : SwissVarQ96PL1
PhosPhoSitePlusQ96PL1
Domains : Interpro (EBI)Secretoglobin   
Domain families : Pfam (Sanger)Uteroglobin (PF01099)   
Domain families : Pfam (NCBI)pfam01099   
Conserved Domain (NCBI)SCGB3A2
DMDM Disease mutations117156
Blocks (Seattle)SCGB3A2
SuperfamilyQ96PL1
Human Protein AtlasENSG00000164265
Peptide AtlasQ96PL1
HPRD05940
IPIIPI00044550   IPI00968066   
Protein Interaction databases
DIP (DOE-UCLA)Q96PL1
IntAct (EBI)Q96PL1
FunCoupENSG00000164265
BioGRIDSCGB3A2
STRING (EMBL)SCGB3A2
ZODIACSCGB3A2
Ontologies - Pathways
QuickGOQ96PL1
Ontology : AmiGOextracellular region  receptor-mediated endocytosis  endocytic vesicle lumen  
Ontology : EGO-EBIextracellular region  receptor-mediated endocytosis  endocytic vesicle lumen  
NDEx NetworkSCGB3A2
Atlas of Cancer Signalling NetworkSCGB3A2
Wikipedia pathwaysSCGB3A2
Orthology - Evolution
OrthoDB117156
GeneTree (enSembl)ENSG00000164265
Phylogenetic Trees/Animal Genes : TreeFamSCGB3A2
HOVERGENQ96PL1
HOGENOMQ96PL1
Homologs : HomoloGeneSCGB3A2
Homology/Alignments : Family Browser (UCSC)SCGB3A2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSCGB3A2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SCGB3A2
dbVarSCGB3A2
ClinVarSCGB3A2
1000_GenomesSCGB3A2 
Exome Variant ServerSCGB3A2
ExAC (Exome Aggregation Consortium)SCGB3A2 (select the gene name)
Genetic variants : HAPMAP117156
Genomic Variants (DGV)SCGB3A2 [DGVbeta]
DECIPHER (Syndromes)5:147258274-147261756  ENSG00000164265
CONAN: Copy Number AnalysisSCGB3A2 
Mutations
ICGC Data PortalSCGB3A2 
TCGA Data PortalSCGB3A2 
Broad Tumor PortalSCGB3A2
OASIS PortalSCGB3A2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSCGB3A2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSCGB3A2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SCGB3A2
DgiDB (Drug Gene Interaction Database)SCGB3A2
DoCM (Curated mutations)SCGB3A2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SCGB3A2 (select a term)
intoGenSCGB3A2
Cancer3DSCGB3A2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM600807    606531   
Orphanet
MedgenSCGB3A2
Genetic Testing Registry SCGB3A2
NextProtQ96PL1 [Medical]
TSGene117156
GENETestsSCGB3A2
Huge Navigator SCGB3A2 [HugePedia]
snp3D : Map Gene to Disease117156
BioCentury BCIQSCGB3A2
ClinGenSCGB3A2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD117156
Chemical/Pharm GKB GenePA34995
Clinical trialSCGB3A2
Miscellaneous
canSAR (ICR)SCGB3A2 (select the gene name)
Probes
Litterature
PubMed24 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSCGB3A2
EVEXSCGB3A2
GoPubMedSCGB3A2
iHOPSCGB3A2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:26:19 CET 2017

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