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SCHIP1 (schwannomin interacting protein 1)

Identity

Alias_namesschwannomin-interacting protein 1
Alias_symbol (synonym)SCHIP-1
Other alias
HGNC (Hugo) SCHIP1
LocusID (NCBI) 29970
Atlas_Id 53043
Location 3q25.32  [Link to chromosome band 3q25]
Location_base_pair Starts at 159273247 and ends at 159897366 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
IQCJ (3q25.32) / SCHIP1 (3q25.32)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SCHIP1   15678
Cards
Entrez_Gene (NCBI)SCHIP1  29970  schwannomin interacting protein 1
AliasesSCHIP-1
GeneCards (Weizmann)SCHIP1
Ensembl hg19 (Hinxton)ENSG00000151967 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000151967 [Gene_View]  chr3:159273247-159897366 [Contig_View]  SCHIP1 [Vega]
ICGC DataPortalENSG00000151967
TCGA cBioPortalSCHIP1
AceView (NCBI)SCHIP1
Genatlas (Paris)SCHIP1
WikiGenes29970
SOURCE (Princeton)SCHIP1
Genetics Home Reference (NIH)SCHIP1
Genomic and cartography
GoldenPath hg38 (UCSC)SCHIP1  -     chr3:159273247-159897366 +  3q25.32   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SCHIP1  -     3q25.32   [Description]    (hg19-Feb_2009)
EnsemblSCHIP1 - 3q25.32 [CytoView hg19]  SCHIP1 - 3q25.32 [CytoView hg38]
Mapping of homologs : NCBISCHIP1 [Mapview hg19]  SCHIP1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF070614 AF145713 AF145714 AF145715 AK091871
RefSeq transcript (Entrez)NM_001197107 NM_001197108 NM_001197109 NM_014575
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SCHIP1
Cluster EST : UnigeneHs.134665 [ NCBI ]
CGAP (NCI)Hs.134665
Alternative Splicing GalleryENSG00000151967
Gene ExpressionSCHIP1 [ NCBI-GEO ]   SCHIP1 [ EBI - ARRAY_EXPRESS ]   SCHIP1 [ SEEK ]   SCHIP1 [ MEM ]
Gene Expression Viewer (FireBrowse)SCHIP1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)29970
GTEX Portal (Tissue expression)SCHIP1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9P0W5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9P0W5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9P0W5
Splice isoforms : SwissVarQ9P0W5
PhosPhoSitePlusQ9P0W5
Domains : Interpro (EBI)SCHIP_1   
Domain families : Pfam (Sanger)SCHIP-1 (PF10148)   
Domain families : Pfam (NCBI)pfam10148   
Conserved Domain (NCBI)SCHIP1
DMDM Disease mutations29970
Blocks (Seattle)SCHIP1
SuperfamilyQ9P0W5
Human Protein AtlasENSG00000151967
Peptide AtlasQ9P0W5
HPRD15302
IPIIPI00794207   IPI00791665   IPI00418250   IPI00791614   IPI00382587   IPI00877759   IPI00946036   IPI00982579   IPI00790442   IPI00983334   IPI00947302   IPI00790876   IPI00788929   IPI00946191   IPI00946227   IPI00946726   
Protein Interaction databases
DIP (DOE-UCLA)Q9P0W5
IntAct (EBI)Q9P0W5
FunCoupENSG00000151967
BioGRIDSCHIP1
STRING (EMBL)SCHIP1
ZODIACSCHIP1
Ontologies - Pathways
QuickGOQ9P0W5
Ontology : AmiGOprotein binding  cytoplasm  biological_process  identical protein binding  
Ontology : EGO-EBIprotein binding  cytoplasm  biological_process  identical protein binding  
NDEx NetworkSCHIP1
Atlas of Cancer Signalling NetworkSCHIP1
Wikipedia pathwaysSCHIP1
Orthology - Evolution
OrthoDB29970
GeneTree (enSembl)ENSG00000151967
Phylogenetic Trees/Animal Genes : TreeFamSCHIP1
HOVERGENQ9P0W5
HOGENOMQ9P0W5
Homologs : HomoloGeneSCHIP1
Homology/Alignments : Family Browser (UCSC)SCHIP1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSCHIP1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SCHIP1
dbVarSCHIP1
ClinVarSCHIP1
1000_GenomesSCHIP1 
Exome Variant ServerSCHIP1
ExAC (Exome Aggregation Consortium)SCHIP1 (select the gene name)
Genetic variants : HAPMAP29970
Genomic Variants (DGV)SCHIP1 [DGVbeta]
DECIPHERSCHIP1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSCHIP1 
Mutations
ICGC Data PortalSCHIP1 
TCGA Data PortalSCHIP1 
Broad Tumor PortalSCHIP1
OASIS PortalSCHIP1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSCHIP1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSCHIP1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SCHIP1
DgiDB (Drug Gene Interaction Database)SCHIP1
DoCM (Curated mutations)SCHIP1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SCHIP1 (select a term)
intoGenSCHIP1
Cancer3DSCHIP1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenSCHIP1
Genetic Testing Registry SCHIP1
NextProtQ9P0W5 [Medical]
TSGene29970
GENETestsSCHIP1
Target ValidationSCHIP1
Huge Navigator SCHIP1 [HugePedia]
snp3D : Map Gene to Disease29970
BioCentury BCIQSCHIP1
ClinGenSCHIP1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD29970
Chemical/Pharm GKB GenePA34997
Clinical trialSCHIP1
Miscellaneous
canSAR (ICR)SCHIP1 (select the gene name)
Probes
Litterature
PubMed20 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSCHIP1
EVEXSCHIP1
GoPubMedSCHIP1
iHOPSCHIP1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Aug 1 17:13:49 CEST 2017

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