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SCHIP1 (schwannomin interacting protein 1)

Identity

Alias_namesschwannomin-interacting protein 1
Alias_symbol (synonym)SCHIP-1
Other alias
HGNC (Hugo) SCHIP1
LocusID (NCBI) 29970
Atlas_Id 53043
Location 3q25.32  [Link to chromosome band 3q25]
Location_base_pair Starts at 159273247 and ends at 159897366 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
IQCJ (3q25.32) / SCHIP1 (3q25.32)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SCHIP1   15678
Cards
Entrez_Gene (NCBI)SCHIP1  29970  schwannomin interacting protein 1
AliasesSCHIP-1
GeneCards (Weizmann)SCHIP1
Ensembl hg19 (Hinxton)ENSG00000151967 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000151967 [Gene_View]  ENSG00000151967 [Sequence]  chr3:159273247-159897366 [Contig_View]  SCHIP1 [Vega]
ICGC DataPortalENSG00000151967
TCGA cBioPortalSCHIP1
AceView (NCBI)SCHIP1
Genatlas (Paris)SCHIP1
WikiGenes29970
SOURCE (Princeton)SCHIP1
Genetics Home Reference (NIH)SCHIP1
Genomic and cartography
GoldenPath hg38 (UCSC)SCHIP1  -     chr3:159273247-159897366 +  3q25.32   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SCHIP1  -     3q25.32   [Description]    (hg19-Feb_2009)
EnsemblSCHIP1 - 3q25.32 [CytoView hg19]  SCHIP1 - 3q25.32 [CytoView hg38]
Mapping of homologs : NCBISCHIP1 [Mapview hg19]  SCHIP1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF070614 AF145713 AF145714 AF145715 AK091871
RefSeq transcript (Entrez)NM_001197107 NM_001197108 NM_001197109 NM_014575
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SCHIP1
Cluster EST : UnigeneHs.134665 [ NCBI ]
CGAP (NCI)Hs.134665
Alternative Splicing GalleryENSG00000151967
Gene ExpressionSCHIP1 [ NCBI-GEO ]   SCHIP1 [ EBI - ARRAY_EXPRESS ]   SCHIP1 [ SEEK ]   SCHIP1 [ MEM ]
Gene Expression Viewer (FireBrowse)SCHIP1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)29970
GTEX Portal (Tissue expression)SCHIP1
Human Protein AtlasENSG00000151967-SCHIP1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SCHIP1
DMDM Disease mutations29970
Blocks (Seattle)SCHIP1
Human Protein Atlas [tissue]ENSG00000151967-SCHIP1 [tissue]
HPRD15302
IPIIPI00794207   IPI00791665   IPI00418250   IPI00791614   IPI00382587   IPI00877759   IPI00946036   IPI00982579   IPI00790442   IPI00983334   IPI00947302   IPI00790876   IPI00788929   IPI00946191   IPI00946227   IPI00946726   
Protein Interaction databases
FunCoupENSG00000151967
BioGRIDSCHIP1
STRING (EMBL)SCHIP1
ZODIACSCHIP1
Ontologies - Pathways
Huge Navigator SCHIP1 [HugePedia]
snp3D : Map Gene to Disease29970
BioCentury BCIQSCHIP1
ClinGenSCHIP1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD29970
Chemical/Pharm GKB GenePA34997
Clinical trialSCHIP1
Miscellaneous
canSAR (ICR)SCHIP1 (select the gene name)
Probes
Litterature
PubMed22 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSCHIP1
EVEXSCHIP1
GoPubMedSCHIP1
iHOPSCHIP1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 6 11:37:33 CET 2018

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