Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

SCHLAP1 (SWI/SNF complex antagonist associated with prostate cancer 1)

Identity

Alias (NCBI)LINC00913
PCAT11
PCAT114
HGNC (Hugo) SCHLAP1
HGNC Alias symbPCAT11
HGNC Alias nameSecond Chromosome Locus Associated with Prostate 1
 prostate cancer associated transcript 11
HGNC Previous nameLINC00913
HGNC Previous namelong intergenic non-protein coding RNA 913
 SWI/SNF complex antagonist associated with prostate cancer 1 (non-protein coding)
LocusID (NCBI) 101669767
Atlas_Id 53752
Location 2q31.3  [Link to chromosome band 2q31]
Location_base_pair Starts at 180692104 and ends at 180916939 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

Nomenclature
HGNC (Hugo)SCHLAP1   48603
Cards
Entrez_Gene (NCBI)SCHLAP1    SWI/SNF complex antagonist associated with prostate cancer 1
AliasesLINC00913; PCAT11; PCAT114
GeneCards (Weizmann)SCHLAP1
Ensembl hg19 (Hinxton)ENSG00000281131 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000281131 [Gene_View]  ENSG00000281131 [Sequence]  chr2:180692104-180916939 [Contig_View]  SCHLAP1 [Vega]
ICGC DataPortalENSG00000281131
TCGA cBioPortalSCHLAP1
AceView (NCBI)SCHLAP1
Genatlas (Paris)SCHLAP1
SOURCE (Princeton)SCHLAP1
Genetics Home Reference (NIH)SCHLAP1
Genomic and cartography
GoldenPath hg38 (UCSC)SCHLAP1  -     chr2:180692104-180916939 +  2q31.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SCHLAP1  -     2q31.3   [Description]    (hg19-Feb_2009)
GoldenPathSCHLAP1 - 2q31.3 [CytoView hg19]  SCHLAP1 - 2q31.3 [CytoView hg38]
ImmunoBaseENSG00000281131
genome Data Viewer NCBISCHLAP1 [Mapview hg19]  
OMIM615568   
Gene and transcription
Genbank (Entrez)JX117418 JX117419 JX117420 JX117421 JX117422
RefSeq transcript (Entrez)
Consensus coding sequences : CCDS (NCBI)SCHLAP1
Alternative Splicing GalleryENSG00000281131
Gene ExpressionSCHLAP1 [ NCBI-GEO ]   SCHLAP1 [ EBI - ARRAY_EXPRESS ]   SCHLAP1 [ SEEK ]   SCHLAP1 [ MEM ]
Gene Expression Viewer (FireBrowse)SCHLAP1 [ Firebrowse - Broad ]
GenevisibleExpression of SCHLAP1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)101669767
GTEX Portal (Tissue expression)SCHLAP1
Human Protein AtlasENSG00000281131-SCHLAP1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SCHLAP1
Human Protein Atlas [tissue]ENSG00000281131-SCHLAP1 [tissue]
Protein Interaction databases
BioGRIDSCHLAP1
STRING (EMBL)SCHLAP1
ZODIACSCHLAP1
Ontologies - Pathways
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXSCHLAP1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Sep 15 22:35:43 CEST 2021

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.