Atlas of Genetics and Cytogenetics in Oncology and Haematology


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SCHLAP1 (SWI/SNF complex antagonist associated with prostate cancer 1 (non-protein coding))

Identity

Alias_namesLINC00913
long intergenic non-protein coding RNA 913
Alias_symbol (synonym)SChLAP1
PCAT11
Other aliasPCAT114
HGNC (Hugo) SCHLAP1
LocusID (NCBI) 101669767
Atlas_Id 53752
Location 2q31.3  [Link to chromosome band 2q31]
Location_base_pair Starts at 181556831 and ends at 181781666 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SCHLAP1   48603
Cards
Entrez_Gene (NCBI)SCHLAP1  101669767  SWI/SNF complex antagonist associated with prostate cancer 1 (non-protein coding)
AliasesLINC00913; PCAT11; PCAT114
GeneCards (Weizmann)SCHLAP1
Ensembl hg19 (Hinxton)ENSG00000281131 [Gene_View]  chr2:181556831-181781666 [Contig_View]  SCHLAP1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000281131 [Gene_View]  chr2:181556831-181781666 [Contig_View]  SCHLAP1 [Vega]
ICGC DataPortalENSG00000281131
TCGA cBioPortalSCHLAP1
AceView (NCBI)SCHLAP1
Genatlas (Paris)SCHLAP1
WikiGenes101669767
SOURCE (Princeton)SCHLAP1
Genetics Home Reference (NIH)SCHLAP1
Genomic and cartography
GoldenPath hg19 (UCSC)SCHLAP1  -     chr2:181556831-181781666 +  2q31.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SCHLAP1  -     2q31.3   [Description]    (hg38-Dec_2013)
EnsemblSCHLAP1 - 2q31.3 [CytoView hg19]  SCHLAP1 - 2q31.3 [CytoView hg38]
Mapping of homologs : NCBISCHLAP1 [Mapview hg19]  SCHLAP1 [Mapview hg38]
OMIM615568   
Gene and transcription
Genbank (Entrez)JX117418 JX117419 JX117420 JX117421 JX117422
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)NC_000002 NC_018913 NT_005403 NW_004929305
Consensus coding sequences : CCDS (NCBI)SCHLAP1
Alternative Splicing GalleryENSG00000281131
Gene ExpressionSCHLAP1 [ NCBI-GEO ]   SCHLAP1 [ EBI - ARRAY_EXPRESS ]   SCHLAP1 [ SEEK ]   SCHLAP1 [ MEM ]
Gene Expression Viewer (FireBrowse)SCHLAP1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)101669767
GTEX Portal (Tissue expression)SCHLAP1
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SCHLAP1
DMDM Disease mutations101669767
Blocks (Seattle)SCHLAP1
Human Protein AtlasENSG00000281131
Protein Interaction databases
FunCoupENSG00000281131
BioGRIDSCHLAP1
STRING (EMBL)SCHLAP1
ZODIACSCHLAP1
Ontologies - Pathways
Huge Navigator SCHLAP1 [HugePedia]
snp3D : Map Gene to Disease101669767
BioCentury BCIQSCHLAP1
ClinGenSCHLAP1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD101669767
Clinical trialSCHLAP1
Miscellaneous
canSAR (ICR)SCHLAP1 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSCHLAP1
EVEXSCHLAP1
GoPubMedSCHLAP1
iHOPSCHLAP1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:26:20 CET 2017

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