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SCIMP (SLP adaptor and CSK interacting membrane protein)

Identity

Alias_namesC17orf87
chromosome 17 open reading frame 87
Alias_symbol (synonym)DTFT5783
UNQ5783
FLJ32580
MGC163426
MGC163428
Other alias
HGNC (Hugo) SCIMP
LocusID (NCBI) 388325
Atlas_Id 73040
Location 17p13.2  [Link to chromosome band 17p13]
Location_base_pair Starts at 5208921 and ends at 5234860 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ZNF594 (17p13.2) / SCIMP (17p13.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SCIMP   33504
Cards
Entrez_Gene (NCBI)SCIMP  388325  SLP adaptor and CSK interacting membrane protein
AliasesC17orf87; UNQ5783
GeneCards (Weizmann)SCIMP
Ensembl hg19 (Hinxton)ENSG00000161929 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000161929 [Gene_View]  chr17:5208921-5234860 [Contig_View]  SCIMP [Vega]
ICGC DataPortalENSG00000161929
TCGA cBioPortalSCIMP
AceView (NCBI)SCIMP
Genatlas (Paris)SCIMP
WikiGenes388325
SOURCE (Princeton)SCIMP
Genetics Home Reference (NIH)SCIMP
Genomic and cartography
GoldenPath hg38 (UCSC)SCIMP  -     chr17:5208921-5234860 -  17p13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SCIMP  -     17p13.2   [Description]    (hg19-Feb_2009)
EnsemblSCIMP - 17p13.2 [CytoView hg19]  SCIMP - 17p13.2 [CytoView hg38]
Mapping of homologs : NCBISCIMP [Mapview hg19]  SCIMP [Mapview hg38]
OMIM614406   
Gene and transcription
Genbank (Entrez)AK057142 AK297035 AK310145 AY358809 BC127925
RefSeq transcript (Entrez)NM_001271842 NM_001319190 NM_207103
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SCIMP
Cluster EST : UnigeneHs.462080 [ NCBI ]
CGAP (NCI)Hs.462080
Alternative Splicing GalleryENSG00000161929
Gene ExpressionSCIMP [ NCBI-GEO ]   SCIMP [ EBI - ARRAY_EXPRESS ]   SCIMP [ SEEK ]   SCIMP [ MEM ]
Gene Expression Viewer (FireBrowse)SCIMP [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)388325
GTEX Portal (Tissue expression)SCIMP
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6UWF3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6UWF3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6UWF3
Splice isoforms : SwissVarQ6UWF3
PhosPhoSitePlusQ6UWF3
Domains : Interpro (EBI)SCIMP   
Domain families : Pfam (Sanger)SCIMP (PF15050)   
Domain families : Pfam (NCBI)pfam15050   
Conserved Domain (NCBI)SCIMP
DMDM Disease mutations388325
Blocks (Seattle)SCIMP
SuperfamilyQ6UWF3
Human Protein AtlasENSG00000161929
Peptide AtlasQ6UWF3
HPRD18267
IPIIPI00478640   IPI00747407   IPI00872065   
Protein Interaction databases
DIP (DOE-UCLA)Q6UWF3
IntAct (EBI)Q6UWF3
FunCoupENSG00000161929
BioGRIDSCIMP
STRING (EMBL)SCIMP
ZODIACSCIMP
Ontologies - Pathways
QuickGOQ6UWF3
Ontology : AmiGOimmunological synapse  protein binding  meiosis I  membrane  integral component of membrane  leading edge membrane  uropod membrane  positive regulation of ERK1 and ERK2 cascade  tetraspanin-enriched microdomain  
Ontology : EGO-EBIimmunological synapse  protein binding  meiosis I  membrane  integral component of membrane  leading edge membrane  uropod membrane  positive regulation of ERK1 and ERK2 cascade  tetraspanin-enriched microdomain  
NDEx NetworkSCIMP
Atlas of Cancer Signalling NetworkSCIMP
Wikipedia pathwaysSCIMP
Orthology - Evolution
OrthoDB388325
GeneTree (enSembl)ENSG00000161929
Phylogenetic Trees/Animal Genes : TreeFamSCIMP
HOVERGENQ6UWF3
HOGENOMQ6UWF3
Homologs : HomoloGeneSCIMP
Homology/Alignments : Family Browser (UCSC)SCIMP
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSCIMP [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SCIMP
dbVarSCIMP
ClinVarSCIMP
1000_GenomesSCIMP 
Exome Variant ServerSCIMP
ExAC (Exome Aggregation Consortium)SCIMP (select the gene name)
Genetic variants : HAPMAP388325
Genomic Variants (DGV)SCIMP [DGVbeta]
DECIPHERSCIMP [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSCIMP 
Mutations
ICGC Data PortalSCIMP 
TCGA Data PortalSCIMP 
Broad Tumor PortalSCIMP
OASIS PortalSCIMP [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSCIMP  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSCIMP
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SCIMP
DgiDB (Drug Gene Interaction Database)SCIMP
DoCM (Curated mutations)SCIMP (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SCIMP (select a term)
intoGenSCIMP
Cancer3DSCIMP(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM614406   
Orphanet
MedgenSCIMP
Genetic Testing Registry SCIMP
NextProtQ6UWF3 [Medical]
TSGene388325
GENETestsSCIMP
Target ValidationSCIMP
Huge Navigator SCIMP [HugePedia]
snp3D : Map Gene to Disease388325
BioCentury BCIQSCIMP
ClinGenSCIMP
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD388325
Chemical/Pharm GKB GenePA162378517
Clinical trialSCIMP
Miscellaneous
canSAR (ICR)SCIMP (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSCIMP
EVEXSCIMP
GoPubMedSCIMP
iHOPSCIMP
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:40:06 CEST 2017

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