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SCLT1 (sodium channel and clathrin linker 1)

Identity

Alias_symbol (synonym)hCAP-1A
FLJ30655
Other aliasCAP-1A
CAP1A
HGNC (Hugo) SCLT1
LocusID (NCBI) 132320
Atlas_Id 73041
Location 4q28.2  [Link to chromosome band 4q28]
Location_base_pair Starts at 129960348 and ends at 130014762 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
GPM6A (4q34.2) / SCLT1 (4q28.2)SCLT1 (4q28.2) / DNAJB1 (19p13.12)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SCLT1   26406
Cards
Entrez_Gene (NCBI)SCLT1  132320  sodium channel and clathrin linker 1
AliasesCAP-1A; CAP1A
GeneCards (Weizmann)SCLT1
Ensembl hg19 (Hinxton)ENSG00000151466 [Gene_View]  chr4:129960348-130014762 [Contig_View]  SCLT1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000151466 [Gene_View]  chr4:129960348-130014762 [Contig_View]  SCLT1 [Vega]
ICGC DataPortalENSG00000151466
TCGA cBioPortalSCLT1
AceView (NCBI)SCLT1
Genatlas (Paris)SCLT1
WikiGenes132320
SOURCE (Princeton)SCLT1
Genetics Home Reference (NIH)SCLT1
Genomic and cartography
GoldenPath hg19 (UCSC)SCLT1  -     chr4:129960348-130014762 -  4q28.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SCLT1  -     4q28.2   [Description]    (hg38-Dec_2013)
EnsemblSCLT1 - 4q28.2 [CytoView hg19]  SCLT1 - 4q28.2 [CytoView hg38]
Mapping of homologs : NCBISCLT1 [Mapview hg19]  SCLT1 [Mapview hg38]
OMIM611399   
Gene and transcription
Genbank (Entrez)AK055217 AK093361 AK122852 AL557810 BC014677
RefSeq transcript (Entrez)NM_001300897 NM_001300898 NM_144643
RefSeq genomic (Entrez)NC_000004 NC_018915 NG_034202 NT_016354 NW_004929320
Consensus coding sequences : CCDS (NCBI)SCLT1
Cluster EST : UnigeneHs.654690 [ NCBI ]
CGAP (NCI)Hs.654690
Alternative Splicing GalleryENSG00000151466
Gene ExpressionSCLT1 [ NCBI-GEO ]   SCLT1 [ EBI - ARRAY_EXPRESS ]   SCLT1 [ SEEK ]   SCLT1 [ MEM ]
Gene Expression Viewer (FireBrowse)SCLT1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)132320
GTEX Portal (Tissue expression)SCLT1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96NL6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96NL6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96NL6
Splice isoforms : SwissVarQ96NL6
PhosPhoSitePlusQ96NL6
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SCLT1
DMDM Disease mutations132320
Blocks (Seattle)SCLT1
SuperfamilyQ96NL6
Human Protein AtlasENSG00000151466
Peptide AtlasQ96NL6
HPRD08700
IPIIPI00043740   IPI00884940   IPI00885162   IPI00885137   IPI00967293   IPI00964174   
Protein Interaction databases
DIP (DOE-UCLA)Q96NL6
IntAct (EBI)Q96NL6
FunCoupENSG00000151466
BioGRIDSCLT1
STRING (EMBL)SCLT1
ZODIACSCLT1
Ontologies - Pathways
QuickGOQ96NL6
Ontology : AmiGOcentrosome  centriole  cytosol  organelle organization  protein C-terminus binding  sodium channel regulator activity  clathrin binding  cilium assembly  clustering of voltage-gated sodium channels  extracellular exosome  clathrin complex  ciliary transition fiber  
Ontology : EGO-EBIcentrosome  centriole  cytosol  organelle organization  protein C-terminus binding  sodium channel regulator activity  clathrin binding  cilium assembly  clustering of voltage-gated sodium channels  extracellular exosome  clathrin complex  ciliary transition fiber  
NDEx NetworkSCLT1
Atlas of Cancer Signalling NetworkSCLT1
Wikipedia pathwaysSCLT1
Orthology - Evolution
OrthoDB132320
GeneTree (enSembl)ENSG00000151466
Phylogenetic Trees/Animal Genes : TreeFamSCLT1
HOVERGENQ96NL6
HOGENOMQ96NL6
Homologs : HomoloGeneSCLT1
Homology/Alignments : Family Browser (UCSC)SCLT1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSCLT1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SCLT1
dbVarSCLT1
ClinVarSCLT1
1000_GenomesSCLT1 
Exome Variant ServerSCLT1
ExAC (Exome Aggregation Consortium)SCLT1 (select the gene name)
Genetic variants : HAPMAP132320
Genomic Variants (DGV)SCLT1 [DGVbeta]
DECIPHER (Syndromes)4:129960348-130014762  ENSG00000151466
CONAN: Copy Number AnalysisSCLT1 
Mutations
ICGC Data PortalSCLT1 
TCGA Data PortalSCLT1 
Broad Tumor PortalSCLT1
OASIS PortalSCLT1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSCLT1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSCLT1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SCLT1
DgiDB (Drug Gene Interaction Database)SCLT1
DoCM (Curated mutations)SCLT1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SCLT1 (select a term)
intoGenSCLT1
Cancer3DSCLT1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611399   
Orphanet
MedgenSCLT1
Genetic Testing Registry SCLT1
NextProtQ96NL6 [Medical]
TSGene132320
GENETestsSCLT1
Huge Navigator SCLT1 [HugePedia]
snp3D : Map Gene to Disease132320
BioCentury BCIQSCLT1
ClinGenSCLT1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD132320
Chemical/Pharm GKB GenePA147357369
Clinical trialSCLT1
Miscellaneous
canSAR (ICR)SCLT1 (select the gene name)
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSCLT1
EVEXSCLT1
GoPubMedSCLT1
iHOPSCLT1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:42:32 CET 2017

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