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SCMH1 (Scm polycomb group protein homolog 1)

Identity

Alias (NCBI)Scml3
HGNC (Hugo) SCMH1
HGNC Alias symbScml3
LocusID (NCBI) 22955
Atlas_Id 73042
Location 1p34.2  [Link to chromosome band 1p34]
Location_base_pair Starts at 41027202 and ends at 41242306 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
MEAF6 (1p34.3) / SCMH1 (1p34.2)SCMH1 (1p34.2) / AKAP9 (7q21.2)SCMH1 (1p34.2) / CUL3 (2q36.2)
SCMH1 (1p34.2) / EIF2B3 (1p34.1)SCMH1 (1p34.2) / GPBP1L1 (1p34.1)SCMH1 (1p34.2) / PPT1 (1p34.2)
SCMH1 (1p34.2) / SGK494 (17q11.2)SCMH1 (1p34.2) / SHISA5 (3p21.31)SCMH1 PPT1
SCMH1 EIF2B3SCMH1 GPBP1L1SCMH1 SHISA5
SCMH1 CUL3

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)SCMH1   19003
Cards
Entrez_Gene (NCBI)SCMH1    Scm polycomb group protein homolog 1
AliasesScml3
GeneCards (Weizmann)SCMH1
Ensembl hg19 (Hinxton)ENSG00000010803 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000010803 [Gene_View]  ENSG00000010803 [Sequence]  chr1:41027202-41242306 [Contig_View]  SCMH1 [Vega]
ICGC DataPortalENSG00000010803
TCGA cBioPortalSCMH1
AceView (NCBI)SCMH1
Genatlas (Paris)SCMH1
SOURCE (Princeton)SCMH1
Genetics Home Reference (NIH)SCMH1
Genomic and cartography
GoldenPath hg38 (UCSC)SCMH1  -     chr1:41027202-41242306 -  1p34.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SCMH1  -     1p34.2   [Description]    (hg19-Feb_2009)
GoldenPathSCMH1 - 1p34.2 [CytoView hg19]  SCMH1 - 1p34.2 [CytoView hg38]
ImmunoBaseENSG00000010803
Genome Data Viewer NCBISCMH1 [Mapview hg19]  
OMIM616396   
Gene and transcription
Genbank (Entrez)AA912153 AF149045 AF149046 AK023124 AK299383
RefSeq transcript (Entrez)NM_001031694 NM_001172218 NM_001172219 NM_001172220 NM_001172221 NM_001172222 NM_001350667 NM_001350668 NM_001394299 NM_001394300 NM_001394301 NM_001394302 NM_001394303 NM_001394304 NM_001394305 NM_001394306 NM_001394307 NM_001394308 NM_001394309 NM_001394311 NM_012236
Consensus coding sequences : CCDS (NCBI)SCMH1
Gene ExpressionSCMH1 [ NCBI-GEO ]   SCMH1 [ EBI - ARRAY_EXPRESS ]   SCMH1 [ SEEK ]   SCMH1 [ MEM ]
Gene Expression Viewer (FireBrowse)SCMH1 [ Firebrowse - Broad ]
GenevisibleExpression of SCMH1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)22955
GTEX Portal (Tissue expression)SCMH1
Human Protein AtlasENSG00000010803-SCMH1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96GD3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96GD3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96GD3
PhosPhoSitePlusQ96GD3
Domaine pattern : Prosite (Expaxy)MBT (PS51079)    SAM_DOMAIN (PS50105)   
Domains : Interpro (EBI)Mbt    SAM    SAM/pointed_sf    SCML2_RBR    SLED    SLED_sf   
Domain families : Pfam (Sanger)MBT (PF02820)    RBR (PF17208)    SAM_1 (PF00536)    SLED (PF12140)   
Domain families : Pfam (NCBI)pfam02820    pfam17208    pfam00536    pfam12140   
Domain families : Smart (EMBL)MBT (SM00561)  SAM (SM00454)  
Conserved Domain (NCBI)SCMH1
PDB (RSDB)2P0K   
PDB Europe2P0K   
PDB (PDBSum)2P0K   
PDB (IMB)2P0K   
Structural Biology KnowledgeBase2P0K   
SCOP (Structural Classification of Proteins)2P0K   
CATH (Classification of proteins structures)2P0K   
SuperfamilyQ96GD3
AlphaFold pdb e-kbQ96GD3   
Human Protein Atlas [tissue]ENSG00000010803-SCMH1 [tissue]
HPRD11540
Protein Interaction databases
DIP (DOE-UCLA)Q96GD3
IntAct (EBI)Q96GD3
BioGRIDSCMH1
STRING (EMBL)SCMH1
ZODIACSCMH1
Ontologies - Pathways
QuickGOQ96GD3
Ontology : AmiGOchromatin binding  protein binding  nucleus  nucleoplasm  chromatin remodeling  spermatogenesis  anterior/posterior pattern specification  chromocenter  gene silencing  histone binding  negative regulation of transcription, DNA-templated  negative regulation of transcription, DNA-templated  
Ontology : EGO-EBIchromatin binding  protein binding  nucleus  nucleoplasm  chromatin remodeling  spermatogenesis  anterior/posterior pattern specification  chromocenter  gene silencing  histone binding  negative regulation of transcription, DNA-templated  negative regulation of transcription, DNA-templated  
NDEx NetworkSCMH1
Atlas of Cancer Signalling NetworkSCMH1
Wikipedia pathwaysSCMH1
Orthology - Evolution
OrthoDB22955
GeneTree (enSembl)ENSG00000010803
Phylogenetic Trees/Animal Genes : TreeFamSCMH1
Homologs : HomoloGeneSCMH1
Homology/Alignments : Family Browser (UCSC)SCMH1
Gene fusions - Rearrangements
Fusion : QuiverSCMH1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSCMH1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SCMH1
dbVarSCMH1
ClinVarSCMH1
MonarchSCMH1
1000_GenomesSCMH1 
Exome Variant ServerSCMH1
GNOMAD BrowserENSG00000010803
Varsome BrowserSCMH1
ACMGSCMH1 variants
VarityQ96GD3
Genomic Variants (DGV)SCMH1 [DGVbeta]
DECIPHERSCMH1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSCMH1 
Mutations
ICGC Data PortalSCMH1 
TCGA Data PortalSCMH1 
Broad Tumor PortalSCMH1
OASIS PortalSCMH1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSCMH1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DSCMH1
Mutations and Diseases : HGMDSCMH1
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaSCMH1
DgiDB (Drug Gene Interaction Database)SCMH1
DoCM (Curated mutations)SCMH1
CIViC (Clinical Interpretations of Variants in Cancer)SCMH1
Cancer3DSCMH1
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616396   
Orphanet
DisGeNETSCMH1
MedgenSCMH1
Genetic Testing Registry SCMH1
NextProtQ96GD3 [Medical]
GENETestsSCMH1
Target ValidationSCMH1
Huge Navigator SCMH1 [HugePedia]
ClinGenSCMH1
Clinical trials, drugs, therapy
MyCancerGenomeSCMH1
Protein Interactions : CTDSCMH1
Pharm GKB GenePA134870272
PharosQ96GD3
Clinical trialSCMH1
Miscellaneous
canSAR (ICR)SCMH1
HarmonizomeSCMH1
DataMed IndexSCMH1
Probes
Litterature
PubMed24 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXSCMH1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 16:19:59 CEST 2021

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