SCMH1 (Scm polycomb group protein homolog 1)

2014-11-01  

Identity

HGNC
SCMH1
LOCATION
1p34.2
LOCUSID
22955
ALIAS
Scml3
FUSION GENES
Show Gene Fusions

Other Information

Locus ID:

NCBI: 22955
MIM: 616396
HGNC: 19003
Ensembl: ENSG00000010803

Variants:

dbSNP: 22955
ClinVar: 22955
TCGA: ENSG00000010803
COSMIC: SCMH1

RNA/Proteins

Gene IDTranscript IDUniprot
ENSG00000010803ENST00000326197Q96GD3
ENSG00000010803ENST00000337495Q96GD3
ENSG00000010803ENST00000361191Q96GD3
ENSG00000010803ENST00000361705Q96GD3
ENSG00000010803ENST00000372595Q96GD3
ENSG00000010803ENST00000372596Q96GD3
ENSG00000010803ENST00000372597Q96GD3
ENSG00000010803ENST00000397171Q96GD3
ENSG00000010803ENST00000397174Q96GD3
ENSG00000010803ENST00000402904Q96GD3
ENSG00000010803ENST00000456518Q96GD3
ENSG00000010803ENST00000472037A0A087WW29

Expression (GTEx)

0
10
20
30
40
50
60
70
80
Adipose - Subcutaneous
Adipose - Visceral
Adrenal Gland
Artery - Aorta
Artery - Tibial
Bladder
Brain - Amygdala
Brain - Anterior cingulate cortex
Brain - Caudate
Brain - Cerebellar Hemisphere
Brain - Cerebellum
Brain - Cortex
Brain - Frontal Cortex
Brain - Hippocampus
Brain - Hypothalamus
Brain - Nucleus accumbens
Brain - Putamen
Brain - Spinal cord
Brain - Substantia nigra
Breast - Mammary Tissue
Cells - Cultured fibroblasts
Cells - EBV - transformed lymphocytes
Cervix - Ectocervix
Cervix - Endocervix
Colon - Sigmoid
Colon - Transverse
Esophagus - Gastroesophageal Junction
Esophagus - Mucosa
Esophagus - Muscularis
Fallopian Tube
Heart - Atrial Appendage
Heart - Left Ventricle
Kidney - Cortex
Kidney - Medulla
Liver
Lung
Minor Salivary Gland
Muscle - Skeletal
Nerve - Tibial
Ovary
Pancreas
Pituitary
Prostate
Skin - Not Sun Exposed
Skin - Sun Exposed
Small Intestine - Terminal Ileum
Spleen
Stomach
Testis
Thyroid
Uterus
Vagina
Whole Blood

Pathways

PathwaySourceExternal ID
Metabolism of proteinsREACTOMER-HSA-392499
Post-translational protein modificationREACTOMER-HSA-597592
SUMOylationREACTOMER-HSA-2990846
SUMO E3 ligases SUMOylate target proteinsREACTOMER-HSA-3108232
SUMOylation of DNA damage response and repair proteinsREACTOMER-HSA-3108214
Cellular responses to stressREACTOMER-HSA-2262752
Cellular SenescenceREACTOMER-HSA-2559583
Oxidative Stress Induced SenescenceREACTOMER-HSA-2559580
SUMOylation of RNA binding proteinsREACTOMER-HSA-4570464

References

Pubmed IDYearTitleCitations
192660772009Genetic determinants of height growth assessed longitudinally from infancy to adulthood in the northern Finland birth cohort 1966.48
205466122010The role of height-associated loci identified in genome wide association studies in the determination of pediatric stature.19

Citation

Dessen P

SCMH1 (Scm polycomb group protein homolog 1)

Atlas Genet Cytogenet Oncol Haematol. 2014-11-01

Online version: http://atlasgeneticsoncology.org/gene/73042/scmh1