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SCML1 (sex comb on midleg-like 1 (Drosophila))

Identity

Alias_namessex comb on midleg (Drosophila)-like 1
Other alias-
HGNC (Hugo) SCML1
LocusID (NCBI) 6322
Atlas_Id 47448
Location Xp22.13  [Link to chromosome band Xp22]
Location_base_pair Starts at 17755569 and ends at 17773108 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SCML1   10580
Cards
Entrez_Gene (NCBI)SCML1  6322  sex comb on midleg-like 1 (Drosophila)
Aliases
GeneCards (Weizmann)SCML1
Ensembl hg19 (Hinxton)ENSG00000047634 [Gene_View]  chrX:17755569-17773108 [Contig_View]  SCML1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000047634 [Gene_View]  chrX:17755569-17773108 [Contig_View]  SCML1 [Vega]
ICGC DataPortalENSG00000047634
TCGA cBioPortalSCML1
AceView (NCBI)SCML1
Genatlas (Paris)SCML1
WikiGenes6322
SOURCE (Princeton)SCML1
Genetics Home Reference (NIH)SCML1
Genomic and cartography
GoldenPath hg19 (UCSC)SCML1  -     chrX:17755569-17773108 +  Xp22.13   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SCML1  -     Xp22.13   [Description]    (hg38-Dec_2013)
EnsemblSCML1 - Xp22.13 [CytoView hg19]  SCML1 - Xp22.13 [CytoView hg38]
Mapping of homologs : NCBISCML1 [Mapview hg19]  SCML1 [Mapview hg38]
OMIM300227   
Gene and transcription
Genbank (Entrez)AA382395 AF160728 AK094942 AK313993 BC009193
RefSeq transcript (Entrez)NM_001037535 NM_001037536 NM_001037540 NM_006746
RefSeq genomic (Entrez)NC_000023 NC_018934 NT_167197 NW_004929438
Consensus coding sequences : CCDS (NCBI)SCML1
Cluster EST : UnigeneHs.658510 [ NCBI ]
CGAP (NCI)Hs.658510
Alternative Splicing GalleryENSG00000047634
Gene ExpressionSCML1 [ NCBI-GEO ]   SCML1 [ EBI - ARRAY_EXPRESS ]   SCML1 [ SEEK ]   SCML1 [ MEM ]
Gene Expression Viewer (FireBrowse)SCML1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)6322
GTEX Portal (Tissue expression)SCML1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UN30   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UN30  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UN30
Splice isoforms : SwissVarQ9UN30
PhosPhoSitePlusQ9UN30
Domaine pattern : Prosite (Expaxy)SAM_DOMAIN (PS50105)   
Domains : Interpro (EBI)SAM    SAM/pointed   
Domain families : Pfam (Sanger)SAM_1 (PF00536)   
Domain families : Pfam (NCBI)pfam00536   
Domain families : Smart (EMBL)SAM (SM00454)  
Conserved Domain (NCBI)SCML1
DMDM Disease mutations6322
Blocks (Seattle)SCML1
SuperfamilyQ9UN30
Human Protein AtlasENSG00000047634
Peptide AtlasQ9UN30
HPRD02205
IPIIPI00186157   IPI00643343   IPI00792939   IPI00644316   
Protein Interaction databases
DIP (DOE-UCLA)Q9UN30
IntAct (EBI)Q9UN30
FunCoupENSG00000047634
BioGRIDSCML1
STRING (EMBL)SCML1
ZODIACSCML1
Ontologies - Pathways
QuickGOQ9UN30
Ontology : AmiGODNA binding  transcription factor activity, sequence-specific DNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  anatomical structure morphogenesis  
Ontology : EGO-EBIDNA binding  transcription factor activity, sequence-specific DNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  anatomical structure morphogenesis  
NDEx NetworkSCML1
Atlas of Cancer Signalling NetworkSCML1
Wikipedia pathwaysSCML1
Orthology - Evolution
OrthoDB6322
GeneTree (enSembl)ENSG00000047634
Phylogenetic Trees/Animal Genes : TreeFamSCML1
HOVERGENQ9UN30
HOGENOMQ9UN30
Homologs : HomoloGeneSCML1
Homology/Alignments : Family Browser (UCSC)SCML1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSCML1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SCML1
dbVarSCML1
ClinVarSCML1
1000_GenomesSCML1 
Exome Variant ServerSCML1
ExAC (Exome Aggregation Consortium)SCML1 (select the gene name)
Genetic variants : HAPMAP6322
Genomic Variants (DGV)SCML1 [DGVbeta]
DECIPHER (Syndromes)X:17755569-17773108  ENSG00000047634
CONAN: Copy Number AnalysisSCML1 
Mutations
ICGC Data PortalSCML1 
TCGA Data PortalSCML1 
Broad Tumor PortalSCML1
OASIS PortalSCML1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSCML1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSCML1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SCML1
DgiDB (Drug Gene Interaction Database)SCML1
DoCM (Curated mutations)SCML1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SCML1 (select a term)
intoGenSCML1
Cancer3DSCML1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300227   
Orphanet
MedgenSCML1
Genetic Testing Registry SCML1
NextProtQ9UN30 [Medical]
TSGene6322
GENETestsSCML1
Huge Navigator SCML1 [HugePedia]
snp3D : Map Gene to Disease6322
BioCentury BCIQSCML1
ClinGenSCML1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD6322
Chemical/Pharm GKB GenePA34998
Clinical trialSCML1
Miscellaneous
canSAR (ICR)SCML1 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSCML1
EVEXSCML1
GoPubMedSCML1
iHOPSCML1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:26:21 CET 2017

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