Atlas of Genetics and Cytogenetics in Oncology and Haematology

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SCML1 (sex comb on midleg-like 1 (Drosophila))

Identity

Other names-
HGNC (Hugo) SCML1
LocusID (NCBI) 6322
Location Xp22.13
Location_base_pair Starts at 17755592 and ends at 17773105 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)SCML1   10580
Entrez_Gene (NCBI)SCML1  6322  sex comb on midleg-like 1 (Drosophila)
Cards
GeneCards (Weizmann)SCML1
Ensembl (Hinxton)ENSG00000047634 [Gene_View]  chrX:17755592-17773105 [Contig_View]  SCML1 [Vega]
AceView (NCBI)SCML1
Genatlas (Paris)SCML1
SOURCE (Stanford)NM_001037535 NM_001037536 NM_001037540 NM_006746
Genomic and cartography
GoldenPath (UCSC)SCML1  -  Xp22.13   chrX:17755592-17773105 +  Xp22.13   [Description]    (hg19-Feb_2009)
EnsemblSCML1 - Xp22.13 [CytoView]
Mapping of homologs : NCBISCML1 [Mapview]
OMIM300227   
Gene and transcription
Genbank (Entrez)AF160728 AK313993 BC009193 BC026159 BC105028
RefSeq transcript (SRS)NM_001037535 NM_001037536 NM_001037540 NM_006746
RefSeq transcript (Entrez)NM_001037535 NM_001037536 NM_001037540 NM_006746
RefSeq genomic (SRS)AC_000155 NC_000023 NC_018934 NT_167197 NW_001842360 NW_004078118
RefSeq genomic (Entrez)AC_000155 NC_000023 NC_018934 NT_167197 NW_001842360 NW_004078118
Consensus coding sequences : CCDS (NCBI)SCML1
Cluster EST : UnigeneHs.109655 [ SRS ] Hs.109655 [ NCBI ]
CGAP (NCI)Hs.109655
Alternative Splicing : Fast-db (Paris)GSHG0031406
Alternative Splicing GalleryENSG00000047634
Gene ExpressionSCML1 [ NCBI-GEO ]   SCML1 [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UN30 (SRS) Q9UN30 (Uniprot)
NextProtQ9UN30
With graphics : InterProQ9UN30
Splice isoforms : SwissVarQ9UN30(Swissvar)
Domaine pattern : Prosite (SRS)SAM_DOMAIN (PS50105)   
Domaine pattern : Prosite (Expaxy)SAM_DOMAIN (PS50105)   
Domains : Interpro (SRS)SAM    SAM/pointed    SAM_type1   
Domains : Interpro (EBI)SAM    SAM/pointed    SAM_type1   
Related proteins : CluSTrQ9UN30
Domain families : Pfam (SRS)SAM_1 (PF00536)   
Domain families : Pfam (Sanger)SAM_1 (PF00536)   
Domain families : Pfam (NCBI)pfam00536   
Domain families : Smart (EMBL)SAM (SM00454)  
DMDM6322
Blocks (Seattle)Q9UN30
Human Protein AtlasENSG00000047634
HPRD02205
IPIIPI00186157   IPI00643343   IPI00792939   IPI00644316   
Protein Interaction databases
DIP (DOE-UCLA)Q9UN30
IntAct (EBI)Q9UN30
FunCoupENSG00000047634
REACTOMESCML1
Protein Interaction Database6322
BioGRIDSCML1
InParanoidQ9UN30
Interologous Interaction database Q9UN30
IntegromeDBSCML1
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)SCML1
SNP (GeneSNP Utah)SCML1
SNP : HGBaseSCML1
Genetic variants : HAPMAPSCML1
Somatic Mutations in Cancer : COSMICSCML1 
CONAN: Copy Number AnalysisSCML1 
Mutations and Diseases : HGMDSCML1
OMIM300227   
GENETests300227   
Disease Genetic AssociationSCML1
Huge Navigator SCML1 [HugePedia]  SCML1 [HugeCancerGEM]
Genomic VariantsSCML1  SCML1 [DGVbeta]
snp3D : Map Gene to Disease6322
General knowledge
Homologs : HomoloGeneSCML1
Homology/Alignments : Family Browser (UCSC)SCML1
Phylogenetic Trees/Animal Genes : TreeFamSCML1
Chemical/Protein Interactions : CTD6322
Chemical/Pharm GKB GenePA34998
Clinical trialSCML1
Cancer Resource (Charite)ENSG00000047634
Ontology : AmiGODNA binding  sequence-specific DNA binding transcription factor activity  nucleus  transcription, DNA-dependent  anatomical structure morphogenesis  
Ontology : EGO-EBIDNA binding  sequence-specific DNA binding transcription factor activity  nucleus  transcription, DNA-dependent  anatomical structure morphogenesis  
Other databases
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
PubGeneSCML1
iHOPSCML1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 1 12:20:39 CEST 2013
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