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SCML2 (sex comb on midleg like 2 (Drosophila))

Identity

Alias_namessex comb on midleg (Drosophila)-like 2
Other alias-
HGNC (Hugo) SCML2
LocusID (NCBI) 10389
Atlas_Id 47100
Location Xp22.13  [Link to chromosome band Xp22]
Location_base_pair Starts at 18239313 and ends at 18354724 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
SCML2 (Xp22.13) / MAP7D2 (Xp22.12)SCML2 (Xp22.13) / SCML2 (Xp22.13)SCML2 (Xp22.13) / SH3KBP1 (Xp22.12)
SCML2 Xp22.13 / MAP7D2 Xp22.12

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SCML2   10581
Cards
Entrez_Gene (NCBI)SCML2  10389  sex comb on midleg like 2 (Drosophila)
Aliases
GeneCards (Weizmann)SCML2
Ensembl hg19 (Hinxton)ENSG00000102098 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000102098 [Gene_View]  chrX:18239313-18354724 [Contig_View]  SCML2 [Vega]
ICGC DataPortalENSG00000102098
TCGA cBioPortalSCML2
AceView (NCBI)SCML2
Genatlas (Paris)SCML2
WikiGenes10389
SOURCE (Princeton)SCML2
Genetics Home Reference (NIH)SCML2
Genomic and cartography
GoldenPath hg38 (UCSC)SCML2  -     chrX:18239313-18354724 -  Xp22.13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SCML2  -     Xp22.13   [Description]    (hg19-Feb_2009)
EnsemblSCML2 - Xp22.13 [CytoView hg19]  SCML2 - Xp22.13 [CytoView hg38]
Mapping of homologs : NCBISCML2 [Mapview hg19]  SCML2 [Mapview hg38]
OMIM300208   
Gene and transcription
Genbank (Entrez)AK022824 AK299190 AK303064 AK308140 AK315116
RefSeq transcript (Entrez)NM_006089
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SCML2
Cluster EST : UnigeneHs.495774 [ NCBI ]
CGAP (NCI)Hs.495774
Alternative Splicing GalleryENSG00000102098
Gene ExpressionSCML2 [ NCBI-GEO ]   SCML2 [ EBI - ARRAY_EXPRESS ]   SCML2 [ SEEK ]   SCML2 [ MEM ]
Gene Expression Viewer (FireBrowse)SCML2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10389
GTEX Portal (Tissue expression)SCML2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UQR0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UQR0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UQR0
Splice isoforms : SwissVarQ9UQR0
PhosPhoSitePlusQ9UQR0
Domaine pattern : Prosite (Expaxy)MBT (PS51079)   
Domains : Interpro (EBI)Mbt    SAM    SAM/pointed    SCML2_RBR    SLED   
Domain families : Pfam (Sanger)MBT (PF02820)    RBR (PF17208)    SAM_1 (PF00536)    SLED (PF12140)   
Domain families : Pfam (NCBI)pfam02820    pfam17208    pfam00536    pfam12140   
Domain families : Smart (EMBL)MBT (SM00561)  SAM (SM00454)  
Conserved Domain (NCBI)SCML2
DMDM Disease mutations10389
Blocks (Seattle)SCML2
PDB (SRS)1OI1    2BIV    2MEM    2VYT    4EDU   
PDB (PDBSum)1OI1    2BIV    2MEM    2VYT    4EDU   
PDB (IMB)1OI1    2BIV    2MEM    2VYT    4EDU   
PDB (RSDB)1OI1    2BIV    2MEM    2VYT    4EDU   
Structural Biology KnowledgeBase1OI1    2BIV    2MEM    2VYT    4EDU   
SCOP (Structural Classification of Proteins)1OI1    2BIV    2MEM    2VYT    4EDU   
CATH (Classification of proteins structures)1OI1    2BIV    2MEM    2VYT    4EDU   
SuperfamilyQ9UQR0
Human Protein AtlasENSG00000102098
Peptide AtlasQ9UQR0
HPRD02195
IPIIPI00328688   IPI00472996   IPI00646311   IPI01012512   
Protein Interaction databases
DIP (DOE-UCLA)Q9UQR0
IntAct (EBI)Q9UQR0
FunCoupENSG00000102098
BioGRIDSCML2
STRING (EMBL)SCML2
ZODIACSCML2
Ontologies - Pathways
QuickGOQ9UQR0
Ontology : AmiGODNA binding  transcription factor activity, sequence-specific DNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  anatomical structure morphogenesis  PcG protein complex  
Ontology : EGO-EBIDNA binding  transcription factor activity, sequence-specific DNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  anatomical structure morphogenesis  PcG protein complex  
NDEx NetworkSCML2
Atlas of Cancer Signalling NetworkSCML2
Wikipedia pathwaysSCML2
Orthology - Evolution
OrthoDB10389
GeneTree (enSembl)ENSG00000102098
Phylogenetic Trees/Animal Genes : TreeFamSCML2
HOVERGENQ9UQR0
HOGENOMQ9UQR0
Homologs : HomoloGeneSCML2
Homology/Alignments : Family Browser (UCSC)SCML2
Gene fusions - Rearrangements
Fusion : MitelmanSCML2/MAP7D2 [Xp22.13/Xp22.12]  
Fusion: TCGASCML2 Xp22.13 MAP7D2 Xp22.12 BRCA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSCML2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SCML2
dbVarSCML2
ClinVarSCML2
1000_GenomesSCML2 
Exome Variant ServerSCML2
ExAC (Exome Aggregation Consortium)SCML2 (select the gene name)
Genetic variants : HAPMAP10389
Genomic Variants (DGV)SCML2 [DGVbeta]
DECIPHERSCML2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSCML2 
Mutations
ICGC Data PortalSCML2 
TCGA Data PortalSCML2 
Broad Tumor PortalSCML2
OASIS PortalSCML2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSCML2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSCML2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)X-chromosome gene database
BioMutasearch SCML2
DgiDB (Drug Gene Interaction Database)SCML2
DoCM (Curated mutations)SCML2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SCML2 (select a term)
intoGenSCML2
Cancer3DSCML2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300208   
Orphanet
MedgenSCML2
Genetic Testing Registry SCML2
NextProtQ9UQR0 [Medical]
TSGene10389
GENETestsSCML2
Target ValidationSCML2
Huge Navigator SCML2 [HugePedia]
snp3D : Map Gene to Disease10389
BioCentury BCIQSCML2
ClinGenSCML2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD10389
Chemical/Pharm GKB GenePA34999
Clinical trialSCML2
Miscellaneous
canSAR (ICR)SCML2 (select the gene name)
Probes
Litterature
PubMed19 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSCML2
EVEXSCML2
GoPubMedSCML2
iHOPSCML2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Aug 1 17:13:50 CEST 2017

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