Atlas of Genetics and Cytogenetics in Oncology and Haematology

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   
X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

SCML2 (sex comb on midleg-like 2 (Drosophila))

Identity

Other names-
HGNC (Hugo) SCML2
LocusID (NCBI) 10389
Location Xp22.13
Location_base_pair Starts at 18257433 and ends at 18372844 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)SCML2   10581
Entrez_Gene (NCBI)SCML2  10389  sex comb on midleg-like 2 (Drosophila)
Cards
GeneCards (Weizmann)SCML2
Ensembl (Hinxton)ENSG00000102098 [Gene_View]  chrX:18257433-18372844 [Contig_View]  SCML2 [Vega]
AceView (NCBI)SCML2
Genatlas (Paris)SCML2
SOURCE (Stanford)NM_006089
Genomic and cartography
GoldenPath (UCSC)SCML2  -  Xp22.13   chrX:18257433-18372844 -  Xp22.13   [Description]    (hg19-Feb_2009)
EnsemblSCML2 - Xp22.13 [CytoView]
Mapping of homologs : NCBISCML2 [Mapview]
OMIM300208   
Gene and transcription
Genbank (Entrez)AK022824 AK299190 AK303064 AK308140 AK315116
RefSeq transcript (SRS)NM_006089
RefSeq transcript (Entrez)NM_006089
RefSeq genomic (SRS)AC_000155 NC_000023 NC_018934 NG_021431 NT_167197 NW_001842360 NW_004078118
RefSeq genomic (Entrez)AC_000155 NC_000023 NC_018934 NG_021431 NT_167197 NW_001842360 NW_004078118
Consensus coding sequences : CCDS (NCBI)SCML2
Cluster EST : UnigeneHs.495774 [ SRS ] Hs.495774 [ NCBI ]
CGAP (NCI)Hs.495774
Alternative Splicing : Fast-db (Paris)GSHG0031998
Alternative Splicing GalleryENSG00000102098
Gene ExpressionSCML2 [ NCBI-GEO ]   SCML2 [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UQR0 (SRS) Q9UQR0 (Uniprot)
NextProtQ9UQR0
With graphics : InterProQ9UQR0
Splice isoforms : SwissVarQ9UQR0(Swissvar)
Domaine pattern : Prosite (SRS)MBT (PS51079)    SAM_DOMAIN (PS50105)   
Domaine pattern : Prosite (Expaxy)MBT (PS51079)    SAM_DOMAIN (PS50105)   
Domains : Interpro (SRS)DUF3588    Mbt    SAM    SAM/pointed    SAM_type1   
Domains : Interpro (EBI)DUF3588    Mbt    SAM    SAM/pointed    SAM_type1   
Related proteins : CluSTrQ9UQR0
Domain families : Pfam (SRS)DUF3588 (PF12140)    MBT (PF02820)    SAM_1 (PF00536)   
Domain families : Pfam (Sanger)DUF3588 (PF12140)    MBT (PF02820)    SAM_1 (PF00536)   
Domain families : Pfam (NCBI)pfam12140    pfam02820    pfam00536   
Domain families : Smart (EMBL)MBT (SM00561)  SAM (SM00454)  
DMDM10389
Blocks (Seattle)Q9UQR0
PDB (SRS)1OI1    2BIV    2VYT    4EDU   
PDB (PDBSum)1OI1    2BIV    2VYT    4EDU   
PDB (IMB)1OI1    2BIV    2VYT    4EDU   
PDB (RSDB)1OI1    2BIV    2VYT    4EDU   
Human Protein AtlasENSG00000102098
HPRD02195
IPIIPI00328688   IPI00472996   IPI00646311   IPI01012512   
Protein Interaction databases
DIP (DOE-UCLA)Q9UQR0
IntAct (EBI)Q9UQR0
FunCoupENSG00000102098
REACTOMESCML2
Protein Interaction Database10389
BioGRIDSCML2
InParanoidQ9UQR0
Interologous Interaction database Q9UQR0
IntegromeDBSCML2
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)SCML2
SNP (GeneSNP Utah)SCML2
SNP : HGBaseSCML2
Genetic variants : HAPMAPSCML2
Somatic Mutations in Cancer : COSMICSCML2 
CONAN: Copy Number AnalysisSCML2 
Mutations and Diseases : HGMDSCML2
OMIM300208   
GENETests300208   
Disease Genetic AssociationSCML2
Huge Navigator SCML2 [HugePedia]  SCML2 [HugeCancerGEM]
Genomic VariantsSCML2  SCML2 [DGVbeta]
ClinVarSCML2
snp3D : Map Gene to Disease10389
General knowledge
Homologs : HomoloGeneSCML2
Homology/Alignments : Family Browser (UCSC)SCML2
Phylogenetic Trees/Animal Genes : TreeFamSCML2
Chemical/Protein Interactions : CTD10389
Chemical/Pharm GKB GenePA34999
Clinical trialSCML2
Cancer Resource (Charite)ENSG00000102098
Ontology : AmiGODNA binding  sequence-specific DNA binding transcription factor activity  nucleus  transcription, DNA-dependent  anatomical structure morphogenesis  PcG protein complex  
Ontology : EGO-EBIDNA binding  sequence-specific DNA binding transcription factor activity  nucleus  transcription, DNA-dependent  anatomical structure morphogenesis  PcG protein complex  
Other databases
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
PubGeneSCML2
iHOPSCML2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri Jun 14 17:28:11 CEST 2013
Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.