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SCNM1 (sodium channel modifier 1)

Identity

Alias_symbol (synonym)MGC3180
Other alias-
HGNC (Hugo) SCNM1
LocusID (NCBI) 79005
Atlas_Id 73051
Location 1q21.3  [Link to chromosome band 1q21]
Location_base_pair Starts at 151138498 and ends at 151142773 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
PIP5K1A (1q21.3) / SCNM1 (1q21.3)TNFAIP8L2 (1q21.3) / SCNM1 (1q21.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SCNM1   23136
Cards
Entrez_Gene (NCBI)SCNM1  79005  sodium channel modifier 1
Aliases
GeneCards (Weizmann)SCNM1
Ensembl hg19 (Hinxton)ENSG00000163156 [Gene_View]  chr1:151138498-151142773 [Contig_View]  SCNM1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000163156 [Gene_View]  chr1:151138498-151142773 [Contig_View]  SCNM1 [Vega]
ICGC DataPortalENSG00000163156
TCGA cBioPortalSCNM1
AceView (NCBI)SCNM1
Genatlas (Paris)SCNM1
WikiGenes79005
SOURCE (Princeton)SCNM1
Genetics Home Reference (NIH)SCNM1
Genomic and cartography
GoldenPath hg19 (UCSC)SCNM1  -     chr1:151138498-151142773 +  1q21.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SCNM1  -     1q21.3   [Description]    (hg38-Dec_2013)
EnsemblSCNM1 - 1q21.3 [CytoView hg19]  SCNM1 - 1q21.3 [CytoView hg38]
Mapping of homologs : NCBISCNM1 [Mapview hg19]  SCNM1 [Mapview hg38]
OMIM608095   
Gene and transcription
Genbank (Entrez)AA374943 AI791817 AK056322 AK301644 AV718162
RefSeq transcript (Entrez)NM_001002234 NM_001204856 NM_024041
RefSeq genomic (Entrez)NC_000001 NC_018912 NT_004487 NW_004929293
Consensus coding sequences : CCDS (NCBI)SCNM1
Cluster EST : UnigeneHs.732060 [ NCBI ]
CGAP (NCI)Hs.732060
Alternative Splicing GalleryENSG00000163156
Gene ExpressionSCNM1 [ NCBI-GEO ]   SCNM1 [ EBI - ARRAY_EXPRESS ]   SCNM1 [ SEEK ]   SCNM1 [ MEM ]
Gene Expression Viewer (FireBrowse)SCNM1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79005
GTEX Portal (Tissue expression)SCNM1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BWG6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BWG6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BWG6
Splice isoforms : SwissVarQ9BWG6
PhosPhoSitePlusQ9BWG6
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SCNM1
DMDM Disease mutations79005
Blocks (Seattle)SCNM1
SuperfamilyQ9BWG6
Human Protein AtlasENSG00000163156
Peptide AtlasQ9BWG6
HPRD12162
IPIIPI00031530   
Protein Interaction databases
DIP (DOE-UCLA)Q9BWG6
IntAct (EBI)Q9BWG6
FunCoupENSG00000163156
BioGRIDSCNM1
STRING (EMBL)SCNM1
ZODIACSCNM1
Ontologies - Pathways
QuickGOQ9BWG6
Ontology : AmiGOprotein binding  nucleus  nucleolus  mRNA processing  RNA splicing  nuclear speck  enzyme binding  metal ion binding  
Ontology : EGO-EBIprotein binding  nucleus  nucleolus  mRNA processing  RNA splicing  nuclear speck  enzyme binding  metal ion binding  
NDEx NetworkSCNM1
Atlas of Cancer Signalling NetworkSCNM1
Wikipedia pathwaysSCNM1
Orthology - Evolution
OrthoDB79005
GeneTree (enSembl)ENSG00000163156
Phylogenetic Trees/Animal Genes : TreeFamSCNM1
HOVERGENQ9BWG6
HOGENOMQ9BWG6
Homologs : HomoloGeneSCNM1
Homology/Alignments : Family Browser (UCSC)SCNM1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSCNM1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SCNM1
dbVarSCNM1
ClinVarSCNM1
1000_GenomesSCNM1 
Exome Variant ServerSCNM1
ExAC (Exome Aggregation Consortium)SCNM1 (select the gene name)
Genetic variants : HAPMAP79005
Genomic Variants (DGV)SCNM1 [DGVbeta]
DECIPHER (Syndromes)1:151138498-151142773  ENSG00000163156
CONAN: Copy Number AnalysisSCNM1 
Mutations
ICGC Data PortalSCNM1 
TCGA Data PortalSCNM1 
Broad Tumor PortalSCNM1
OASIS PortalSCNM1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSCNM1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSCNM1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SCNM1
DgiDB (Drug Gene Interaction Database)SCNM1
DoCM (Curated mutations)SCNM1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SCNM1 (select a term)
intoGenSCNM1
Cancer3DSCNM1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608095   
Orphanet
MedgenSCNM1
Genetic Testing Registry SCNM1
NextProtQ9BWG6 [Medical]
TSGene79005
GENETestsSCNM1
Huge Navigator SCNM1 [HugePedia]
snp3D : Map Gene to Disease79005
BioCentury BCIQSCNM1
ClinGenSCNM1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79005
Chemical/Pharm GKB GenePA134958437
Clinical trialSCNM1
Miscellaneous
canSAR (ICR)SCNM1 (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSCNM1
EVEXSCNM1
GoPubMedSCNM1
iHOPSCNM1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:42:33 CET 2017

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