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SCNN1D (sodium channel, non-voltage-gated 1, delta subunit)

Identity

Other namesENaCd
ENaCdelta
SCNED
dNaCh
HGNC (Hugo) SCNN1D
LocusID (NCBI) 6339
Location 1p36.33
Location_base_pair Starts at 1215816 and ends at 1227409 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)SCNN1D   10601
Entrez_Gene (NCBI)SCNN1D  6339  sodium channel, non-voltage-gated 1, delta subunit
Cards
GeneCards (Weizmann)SCNN1D
Ensembl (Hinxton)ENSG00000162572 [Gene_View]  chr1:1215816-1227409 [Contig_View]  SCNN1D [Vega]
AceView (NCBI)SCNN1D
Genatlas (Paris)SCNN1D
SOURCE (Stanford)NM_001130413 NM_002978
Genomic and cartography
GoldenPath (UCSC)SCNN1D  -  1p36.33   chr1:1215816-1227409 +  1p36.33   [Description]    (hg19-Feb_2009)
EnsemblSCNN1D - 1p36.33 [CytoView]
Mapping of homologs : NCBISCNN1D [Mapview]
OMIM601328   
Gene and transcription
Genbank (Entrez)AA617657 AA622685 AK093239 AK093372 AK127357
RefSeq transcript (SRS)NM_001130413 NM_002978
RefSeq transcript (Entrez)NM_001130413 NM_002978
RefSeq genomic (SRS)AC_000133 NC_000001 NC_018912 NT_004350 NW_001838585 NW_004077988
RefSeq genomic (Entrez)AC_000133 NC_000001 NC_018912 NT_004350 NW_001838585 NW_004077988
Consensus coding sequences : CCDS (NCBI)SCNN1D
Cluster EST : UnigeneHs.512681 [ SRS ] Hs.512681 [ NCBI ]
CGAP (NCI)Hs.512681
Alternative Splicing : Fast-db (Paris)GSHG0000025
Alternative Splicing GalleryENSG00000162572
Gene ExpressionSCNN1D [ NCBI-GEO ]   SCNN1D [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP51172 (SRS) P51172 (Uniprot)
NextProtP51172
With graphics : InterProP51172
Splice isoforms : SwissVarP51172(Swissvar)
Domaine pattern : Prosite (SRS)ASC (PS01206)   
Domaine pattern : Prosite (Expaxy)ASC (PS01206)   
Domains : Interpro (SRS)EnaC    Na+channel_ASC    Na+channel_ASC_CS   
Domains : Interpro (EBI)EnaC    Na+channel_ASC    Na+channel_ASC_CS   
Related proteins : CluSTrP51172
Domain families : Pfam (SRS)ASC (PF00858)   
Domain families : Pfam (Sanger)ASC (PF00858)   
Domain families : Pfam (NCBI)pfam00858   
DMDM6339
Blocks (Seattle)P51172
Human Protein AtlasENSG00000162572
HPRD03209
IPIIPI00514599   IPI00334783   IPI00441997   IPI01022053   IPI01021234   IPI01018980   IPI00514605   
Protein Interaction databases
DIP (DOE-UCLA)P51172
IntAct (EBI)P51172
FunCoupENSG00000162572
REACTOMESCNN1D
Protein Interaction Database6339
BioGRIDSCNN1D
InParanoidP51172
Interologous Interaction database P51172
IntegromeDBSCNN1D
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)SCNN1D
SNP (GeneSNP Utah)SCNN1D
SNP : HGBaseSCNN1D
Genetic variants : HAPMAPSCNN1D
Somatic Mutations in Cancer : COSMICSCNN1D 
CONAN: Copy Number AnalysisSCNN1D 
Mutations and Diseases : HGMDSCNN1D
OMIM601328   
GENETests601328   
Disease Genetic AssociationSCNN1D
Huge Navigator SCNN1D [HugePedia]  SCNN1D [HugeCancerGEM]
Genomic VariantsSCNN1D  SCNN1D [DGVbeta]
ClinVarSCNN1D
snp3D : Map Gene to Disease6339
General knowledge
Homologs : HomoloGeneSCNN1D
Homology/Alignments : Family Browser (UCSC)SCNN1D
Phylogenetic Trees/Animal Genes : TreeFamSCNN1D
Chemical/Protein Interactions : CTD6339
Chemical/Pharm GKB GenePA35011
Clinical trialSCNN1D
Cancer Resource (Charite)ENSG00000162572
Ontology : AmiGOprotein binding  plasma membrane  sodium ion transport  ligand-gated sodium channel activity  integral to membrane  ion transmembrane transport  response to stimulus  sensory perception of taste  transmembrane transport  
Ontology : EGO-EBIprotein binding  plasma membrane  sodium ion transport  ligand-gated sodium channel activity  integral to membrane  ion transmembrane transport  response to stimulus  sensory perception of taste  transmembrane transport  
Other databases
Probes
Litterature
PubMed29 Pubmed reference(s) in Entrez
PubGeneSCNN1D
iHOPSCNN1D
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri Jun 14 17:45:58 CEST 2013
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