Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

SCO1 (SCO1 cytochrome c oxidase assembly protein)

Identity

Other namesSCOD1
HGNC (Hugo) SCO1
LocusID (NCBI) 6341
Location 17p13.1
Location_base_pair Starts at 10583649 and ends at 10600885 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)SCO1   10603
Cards
Entrez_Gene (NCBI)SCO1  6341  SCO1 cytochrome c oxidase assembly protein
GeneCards (Weizmann)SCO1
Ensembl (Hinxton)ENSG00000133028 [Gene_View]  chr17:10583649-10600885 [Contig_View]  SCO1 [Vega]
ICGC DataPortalENSG00000133028
cBioPortalSCO1
AceView (NCBI)SCO1
Genatlas (Paris)SCO1
WikiGenes6341
SOURCE (Princeton)NM_004589
Genomic and cartography
GoldenPath (UCSC)SCO1  -  17p13.1   chr17:10583649-10600885 -  17p13.1   [Description]    (hg19-Feb_2009)
EnsemblSCO1 - 17p13.1 [CytoView]
Mapping of homologs : NCBISCO1 [Mapview]
OMIM603644   
Gene and transcription
Genbank (Entrez)AF026852 AF131816 AF183424 AK074588 AK098826
RefSeq transcript (Entrez)NM_004589
RefSeq genomic (Entrez)AC_000149 NC_000017 NC_018928 NG_008228 NT_010718 NW_001838403 NW_004929405
Consensus coding sequences : CCDS (NCBI)SCO1
Cluster EST : UnigeneHs.14511 [ NCBI ]
CGAP (NCI)Hs.14511
Alternative Splicing : Fast-db (Paris)GSHG0013102
Alternative Splicing GalleryENSG00000133028
Gene ExpressionSCO1 [ NCBI-GEO ]     SCO1 [ SEEK ]   SCO1 [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO75880 (Uniprot)
NextProtO75880  [Medical]
With graphics : InterProO75880
Splice isoforms : SwissVarO75880 (Swissvar)
Domains : Interpro (EBI)SCO1/SenC [organisation]   Synth_of_cyt-c-oxidase_Sco1/2 [organisation]   Thioredoxin-like_fold [organisation]  
Related proteins : CluSTrO75880
Domain families : Pfam (Sanger)SCO1-SenC (PF02630)   
Domain families : Pfam (NCBI)pfam02630   
DMDM Disease mutations6341
Blocks (Seattle)O75880
PDB (SRS)1WP0    2GGT    2GQK    2GQL    2GQM    2GT5    2GT6    2GVP    2HRF    2HRN   
PDB (PDBSum)1WP0    2GGT    2GQK    2GQL    2GQM    2GT5    2GT6    2GVP    2HRF    2HRN   
PDB (IMB)1WP0    2GGT    2GQK    2GQL    2GQM    2GT5    2GT6    2GVP    2HRF    2HRN   
PDB (RSDB)1WP0    2GGT    2GQK    2GQL    2GQM    2GT5    2GT6    2GVP    2HRF    2HRN   
Human Protein AtlasENSG00000133028 [gene] [tissue] [antibody] [cell] [cancer]
Peptide AtlasO75880
HPRD04705
IPIIPI00027233   IPI00793065   
Protein Interaction databases
DIP (DOE-UCLA)O75880
IntAct (EBI)O75880
FunCoupENSG00000133028
BioGRIDSCO1
InParanoidO75880
Interologous Interaction database O75880
IntegromeDBSCO1
STRING (EMBL)SCO1
Ontologies - Pathways
Ontology : AmiGOcopper ion binding  mitochondrion  mitochondrial inner membrane  generation of precursor metabolites and energy  copper ion transport  cellular copper ion homeostasis  respiratory chain complex IV assembly  myofibril  
Ontology : EGO-EBIcopper ion binding  mitochondrion  mitochondrial inner membrane  generation of precursor metabolites and energy  copper ion transport  cellular copper ion homeostasis  respiratory chain complex IV assembly  myofibril  
Protein Interaction DatabaseSCO1
Wikipedia pathwaysSCO1
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)SCO1
snp3D : Map Gene to Disease6341
SNP (GeneSNP Utah)SCO1
SNP : HGBaseSCO1
Genetic variants : HAPMAPSCO1
Exome VariantSCO1
1000_GenomesSCO1 
ICGC programENSG00000133028 
Somatic Mutations in Cancer : COSMICSCO1 
CONAN: Copy Number AnalysisSCO1 
Mutations and Diseases : HGMDSCO1
Genomic VariantsSCO1  SCO1 [DGVbeta]
dbVarSCO1
ClinVarSCO1
Pred. of missensesPolyPhen-2  SIFT(SG)  SIFT(JCVI)  Align-GVGD  MutAssessor  Mutanalyser  
Pred. splicesGeneSplicer  Human Splicing Finder  MaxEntScan  
Diseases
OMIM603644   
MedgenSCO1
GENETestsSCO1
Disease Genetic AssociationSCO1
Huge Navigator SCO1 [HugePedia]  SCO1 [HugeCancerGEM]
General knowledge
Homologs : HomoloGeneSCO1
Homology/Alignments : Family Browser (UCSC)SCO1
Phylogenetic Trees/Animal Genes : TreeFamSCO1
Chemical/Protein Interactions : CTD6341
Chemical/Pharm GKB GenePA35012
Clinical trialSCO1
Cancer Resource (Charite)ENSG00000133028
Other databases
Probes
Litterature
PubMed32 Pubmed reference(s) in Entrez
CoreMineSCO1
iHOPSCO1
OncoSearchSCO1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jul 30 14:14:28 CEST 2014

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.