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SCO1 (SCO1 cytochrome c oxidase assembly protein)

Identity

Other namesSCOD1
HGNC (Hugo) SCO1
LocusID (NCBI) 6341
Location 17p13.1
Location_base_pair Starts at 10583649 and ends at 10600885 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)SCO1   10603
Cards
Entrez_Gene (NCBI)SCO1  6341  SCO1 cytochrome c oxidase assembly protein
GeneCards (Weizmann)SCO1
Ensembl (Hinxton)ENSG00000133028 [Gene_View]  chr17:10583649-10600885 [Contig_View]  SCO1 [Vega]
ICGC DataPortalENSG00000133028
AceView (NCBI)SCO1
Genatlas (Paris)SCO1
WikiGenes6341
SOURCE (Princeton)NM_004589
Genomic and cartography
GoldenPath (UCSC)SCO1  -  17p13.1   chr17:10583649-10600885 -  17p13.1   [Description]    (hg19-Feb_2009)
EnsemblSCO1 - 17p13.1 [CytoView]
Mapping of homologs : NCBISCO1 [Mapview]
OMIM603644   
Gene and transcription
Genbank (Entrez)AF026852 AF131816 AF183424 AK074588 AK098826
RefSeq transcript (Entrez)NM_004589
RefSeq genomic (Entrez)AC_000149 NC_000017 NC_018928 NG_008228 NT_010718 NW_001838403 NW_004929405
Consensus coding sequences : CCDS (NCBI)SCO1
Cluster EST : UnigeneHs.14511 [ NCBI ]
CGAP (NCI)Hs.14511
Alternative Splicing : Fast-db (Paris)GSHG0013102
Alternative Splicing GalleryENSG00000133028
Gene ExpressionSCO1 [ NCBI-GEO ]     SCO1 [ SEEK ]   SCO1 [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO75880 (Uniprot)
NextProtO75880  [Medical]
With graphics : InterProO75880
Splice isoforms : SwissVarO75880 (Swissvar)
Domains : Interpro (EBI)SCO1/SenC    Synth_of_cyt-c-oxidase_Sco1/2    Thioredoxin-like_fold   
Related proteins : CluSTrO75880
Domain families : Pfam (Sanger)SCO1-SenC (PF02630)   
Domain families : Pfam (NCBI)pfam02630   
DMDM Disease mutations6341
Blocks (Seattle)O75880
PDB (SRS)1WP0    2GGT    2GQK    2GQL    2GQM    2GT5    2GT6    2GVP    2HRF    2HRN   
PDB (PDBSum)1WP0    2GGT    2GQK    2GQL    2GQM    2GT5    2GT6    2GVP    2HRF    2HRN   
PDB (IMB)1WP0    2GGT    2GQK    2GQL    2GQM    2GT5    2GT6    2GVP    2HRF    2HRN   
PDB (RSDB)1WP0    2GGT    2GQK    2GQL    2GQM    2GT5    2GT6    2GVP    2HRF    2HRN   
Human Protein AtlasENSG00000133028
Peptide AtlasO75880
HPRD04705
IPIIPI00027233   IPI00793065   
Protein Interaction databases
DIP (DOE-UCLA)O75880
IntAct (EBI)O75880
FunCoupENSG00000133028
BioGRIDSCO1
IntegromeDBSCO1
STRING (EMBL)SCO1
Ontologies - Pathways
QuickGOO75880
Ontology : AmiGOcopper ion binding  mitochondrion  mitochondrial inner membrane  generation of precursor metabolites and energy  copper ion transport  cellular copper ion homeostasis  respiratory chain complex IV assembly  myofibril  
Ontology : EGO-EBIcopper ion binding  mitochondrion  mitochondrial inner membrane  generation of precursor metabolites and energy  copper ion transport  cellular copper ion homeostasis  respiratory chain complex IV assembly  myofibril  
Protein Interaction DatabaseSCO1
Wikipedia pathwaysSCO1
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)SCO1
SNP (GeneSNP Utah)SCO1
SNP : HGBaseSCO1
Genetic variants : HAPMAPSCO1
1000_GenomesSCO1 
ICGC programENSG00000133028 
CONAN: Copy Number AnalysisSCO1 
Somatic Mutations in Cancer : COSMICSCO1 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)Mendelian genes
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
DECIPHER (Syndromes)17:10583649-10600885
Mutations and Diseases : HGMDSCO1
OMIM603644   
MedgenSCO1
GENETestsSCO1
Disease Genetic AssociationSCO1
Huge Navigator SCO1 [HugePedia]  SCO1 [HugeCancerGEM]
Genomic VariantsSCO1  SCO1 [DGVbeta]
Exome VariantSCO1
dbVarSCO1
ClinVarSCO1
snp3D : Map Gene to Disease6341
General knowledge
Homologs : HomoloGeneSCO1
Homology/Alignments : Family Browser (UCSC)SCO1
Phylogenetic Trees/Animal Genes : TreeFamSCO1
Chemical/Protein Interactions : CTD6341
Chemical/Pharm GKB GenePA35012
Clinical trialSCO1
Cancer Resource (Charite)ENSG00000133028
Other databases
Probes
Litterature
PubMed32 Pubmed reference(s) in Entrez
CoreMineSCO1
GoPubMedSCO1
iHOPSCO1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Nov 8 17:55:29 CET 2014

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