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SCO1 (SCO1 cytochrome c oxidase assembly protein)

Identity

Other namesSCOD1
HGNC (Hugo) SCO1
LocusID (NCBI) 6341
Atlas_Id 47018
Location 17p13.1
Location_base_pair Starts at 10583649 and ends at 10600885 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
ETFA (15q24.2) / SCO1 (17p13.1)LOC100507412 (-) / SCO1 (17p13.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SCO1   10603
Cards
Entrez_Gene (NCBI)SCO1  6341  SCO1 cytochrome c oxidase assembly protein
AliasesSCOD1
GeneCards (Weizmann)SCO1
Ensembl hg19 (Hinxton)ENSG00000133028 [Gene_View]  chr17:10583649-10600885 [Contig_View]  SCO1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000133028 [Gene_View]  chr17:10583649-10600885 [Contig_View]  SCO1 [Vega]
ICGC DataPortalENSG00000133028
TCGA cBioPortalSCO1
AceView (NCBI)SCO1
Genatlas (Paris)SCO1
WikiGenes6341
SOURCE (Princeton)SCO1
Genomic and cartography
GoldenPath hg19 (UCSC)SCO1  -     chr17:10583649-10600885 -  17p13.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SCO1  -     17p13.1   [Description]    (hg38-Dec_2013)
EnsemblSCO1 - 17p13.1 [CytoView hg19]  SCO1 - 17p13.1 [CytoView hg38]
Mapping of homologs : NCBISCO1 [Mapview hg19]  SCO1 [Mapview hg38]
OMIM220110   603644   
Gene and transcription
Genbank (Entrez)AF026852 AF131816 AF183424 AK074588 AK098826
RefSeq transcript (Entrez)NM_004589
RefSeq genomic (Entrez)NC_000017 NC_018928 NG_008228 NT_010718 NW_004929405
Consensus coding sequences : CCDS (NCBI)SCO1
Cluster EST : UnigeneHs.14511 [ NCBI ]
CGAP (NCI)Hs.14511
Alternative Splicing GalleryENSG00000133028
Gene ExpressionSCO1 [ NCBI-GEO ]   SCO1 [ EBI - ARRAY_EXPRESS ]   SCO1 [ SEEK ]   SCO1 [ MEM ]
Gene Expression Viewer (FireBrowse)SCO1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)6341
GTEX Portal (Tissue expression)SCO1
Protein : pattern, domain, 3D structure
UniProt/SwissProtO75880 (Uniprot)
NextProtO75880  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO75880
Splice isoforms : SwissVarO75880 (Swissvar)
PhosPhoSitePlusO75880
Domains : Interpro (EBI)SCO1/SenC    Synth_of_cyt-c-oxidase_Sco1/2    Thioredoxin-like_fold   
Domain families : Pfam (Sanger)SCO1-SenC (PF02630)   
Domain families : Pfam (NCBI)pfam02630   
DMDM Disease mutations6341
Blocks (Seattle)SCO1
PDB (SRS)1WP0    2GGT    2GQK    2GQL    2GQM    2GT5    2GT6    2GVP    2HRF    2HRN   
PDB (PDBSum)1WP0    2GGT    2GQK    2GQL    2GQM    2GT5    2GT6    2GVP    2HRF    2HRN   
PDB (IMB)1WP0    2GGT    2GQK    2GQL    2GQM    2GT5    2GT6    2GVP    2HRF    2HRN   
PDB (RSDB)1WP0    2GGT    2GQK    2GQL    2GQM    2GT5    2GT6    2GVP    2HRF    2HRN   
Structural Biology KnowledgeBase1WP0    2GGT    2GQK    2GQL    2GQM    2GT5    2GT6    2GVP    2HRF    2HRN   
SCOP (Structural Classification of Proteins)1WP0    2GGT    2GQK    2GQL    2GQM    2GT5    2GT6    2GVP    2HRF    2HRN   
CATH (Classification of proteins structures)1WP0    2GGT    2GQK    2GQL    2GQM    2GT5    2GT6    2GVP    2HRF    2HRN   
SuperfamilyO75880
Human Protein AtlasENSG00000133028
Peptide AtlasO75880
HPRD04705
IPIIPI00027233   IPI00793065   
Protein Interaction databases
DIP (DOE-UCLA)O75880
IntAct (EBI)O75880
FunCoupENSG00000133028
BioGRIDSCO1
STRING (EMBL)SCO1
ZODIACSCO1
Ontologies - Pathways
QuickGOO75880
Ontology : AmiGOcopper ion binding  protein binding  mitochondrion  mitochondrial inner membrane  generation of precursor metabolites and energy  copper ion transport  cellular copper ion homeostasis  respiratory chain complex IV assembly  myofibril  host cell mitochondrial intermembrane space  
Ontology : EGO-EBIcopper ion binding  protein binding  mitochondrion  mitochondrial inner membrane  generation of precursor metabolites and energy  copper ion transport  cellular copper ion homeostasis  respiratory chain complex IV assembly  myofibril  host cell mitochondrial intermembrane space  
NDEx Network
Atlas of Cancer Signalling NetworkSCO1
Wikipedia pathwaysSCO1
Orthology - Evolution
OrthoDB6341
GeneTree (enSembl)ENSG00000133028
Phylogenetic Trees/Animal Genes : TreeFamSCO1
Homologs : HomoloGeneSCO1
Homology/Alignments : Family Browser (UCSC)SCO1
Gene fusions - Rearrangements
Polymorphisms : SNP, variants
NCBI Variation ViewerSCO1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SCO1
dbVarSCO1
ClinVarSCO1
1000_GenomesSCO1 
Exome Variant ServerSCO1
ExAC (Exome Aggregation Consortium)SCO1 (select the gene name)
Genetic variants : HAPMAP6341
Genomic Variants (DGV)SCO1 [DGVbeta]
Mutations
ICGC Data PortalSCO1 
TCGA Data PortalSCO1 
Broad Tumor PortalSCO1
OASIS PortalSCO1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSCO1 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)Mendelian genes
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch SCO1
DgiDB (Drug Gene Interaction Database)SCO1
DoCM (Curated mutations)SCO1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SCO1 (select a term)
intoGenSCO1
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)17:10583649-10600885  ENSG00000133028
CONAN: Copy Number AnalysisSCO1 
Mutations and Diseases : HGMDSCO1
OMIM220110    603644   
MedgenSCO1
Genetic Testing Registry SCO1
NextProtO75880 [Medical]
TSGene6341
GENETestsSCO1
Huge Navigator SCO1 [HugePedia]
snp3D : Map Gene to Disease6341
BioCentury BCIQSCO1
ClinGenSCO1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD6341
Chemical/Pharm GKB GenePA35012
Clinical trialSCO1
Miscellaneous
canSAR (ICR)SCO1 (select the gene name)
Probes
Litterature
PubMed37 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSCO1
EVEXSCO1
GoPubMedSCO1
iHOPSCO1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sat May 28 11:20:12 CEST 2016

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