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SCOC (short coiled-coil protein)

Identity

Alias_namesshort coiled coil protein
Alias_symbol (synonym)HRIHFB2072
SCOCO
UNC-69
Other alias
HGNC (Hugo) SCOC
LocusID (NCBI) 60592
Atlas_Id 73052
Location 4q31.1  [Link to chromosome band 4q31]
Location_base_pair Starts at 140343443 and ends at 140382556 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
SCOC (4q31.1) / TACC1 (8p11.22)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SCOC   20335
Cards
Entrez_Gene (NCBI)SCOC  60592  short coiled-coil protein
AliasesHRIHFB2072; SCOCO; UNC-69
GeneCards (Weizmann)SCOC
Ensembl hg19 (Hinxton)ENSG00000153130 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000153130 [Gene_View]  chr4:140343443-140382556 [Contig_View]  SCOC [Vega]
ICGC DataPortalENSG00000153130
TCGA cBioPortalSCOC
AceView (NCBI)SCOC
Genatlas (Paris)SCOC
WikiGenes60592
SOURCE (Princeton)SCOC
Genetics Home Reference (NIH)SCOC
Genomic and cartography
GoldenPath hg38 (UCSC)SCOC  -     chr4:140343443-140382556 +  4q31.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SCOC  -     4q31.1   [Description]    (hg19-Feb_2009)
EnsemblSCOC - 4q31.1 [CytoView hg19]  SCOC - 4q31.1 [CytoView hg38]
Mapping of homologs : NCBISCOC [Mapview hg19]  SCOC [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA213765 AB015335 AF330205 AF448857 AK027797
RefSeq transcript (Entrez)NM_001153446 NM_001153484 NM_001153552 NM_001153585 NM_001153635 NM_001153663 NM_001153690 NM_032547
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SCOC
Cluster EST : UnigeneHs.480815 [ NCBI ]
CGAP (NCI)Hs.480815
Alternative Splicing GalleryENSG00000153130
Gene ExpressionSCOC [ NCBI-GEO ]   SCOC [ EBI - ARRAY_EXPRESS ]   SCOC [ SEEK ]   SCOC [ MEM ]
Gene Expression Viewer (FireBrowse)SCOC [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)60592
GTEX Portal (Tissue expression)SCOC
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UIL1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UIL1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UIL1
Splice isoforms : SwissVarQ9UIL1
PhosPhoSitePlusQ9UIL1
Domains : Interpro (EBI)DUF2205_coiled-coil   
Domain families : Pfam (Sanger)DUF2205 (PF10224)   
Domain families : Pfam (NCBI)pfam10224   
Conserved Domain (NCBI)SCOC
DMDM Disease mutations60592
Blocks (Seattle)SCOC
PDB (SRS)4BWD   
PDB (PDBSum)4BWD   
PDB (IMB)4BWD   
PDB (RSDB)4BWD   
Structural Biology KnowledgeBase4BWD   
SCOP (Structural Classification of Proteins)4BWD   
CATH (Classification of proteins structures)4BWD   
SuperfamilyQ9UIL1
Human Protein AtlasENSG00000153130
Peptide AtlasQ9UIL1
HPRD18027
IPIIPI00000184   IPI00396594   IPI00893763   IPI00929604   IPI00385126   IPI00929243   IPI00966758   IPI00963819   
Protein Interaction databases
DIP (DOE-UCLA)Q9UIL1
IntAct (EBI)Q9UIL1
FunCoupENSG00000153130
BioGRIDSCOC
STRING (EMBL)SCOC
ZODIACSCOC
Ontologies - Pathways
QuickGOQ9UIL1
Ontology : AmiGOGolgi membrane  protein binding  nucleoplasm  endosome  Golgi apparatus  trans-Golgi network  cytosol  positive regulation of macroautophagy  regulation of protein complex stability  
Ontology : EGO-EBIGolgi membrane  protein binding  nucleoplasm  endosome  Golgi apparatus  trans-Golgi network  cytosol  positive regulation of macroautophagy  regulation of protein complex stability  
NDEx NetworkSCOC
Atlas of Cancer Signalling NetworkSCOC
Wikipedia pathwaysSCOC
Orthology - Evolution
OrthoDB60592
GeneTree (enSembl)ENSG00000153130
Phylogenetic Trees/Animal Genes : TreeFamSCOC
HOVERGENQ9UIL1
HOGENOMQ9UIL1
Homologs : HomoloGeneSCOC
Homology/Alignments : Family Browser (UCSC)SCOC
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSCOC [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SCOC
dbVarSCOC
ClinVarSCOC
1000_GenomesSCOC 
Exome Variant ServerSCOC
ExAC (Exome Aggregation Consortium)SCOC (select the gene name)
Genetic variants : HAPMAP60592
Genomic Variants (DGV)SCOC [DGVbeta]
DECIPHERSCOC [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSCOC 
Mutations
ICGC Data PortalSCOC 
TCGA Data PortalSCOC 
Broad Tumor PortalSCOC
OASIS PortalSCOC [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSCOC  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSCOC
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SCOC
DgiDB (Drug Gene Interaction Database)SCOC
DoCM (Curated mutations)SCOC (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SCOC (select a term)
intoGenSCOC
Cancer3DSCOC(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenSCOC
Genetic Testing Registry SCOC
NextProtQ9UIL1 [Medical]
TSGene60592
GENETestsSCOC
Target ValidationSCOC
Huge Navigator SCOC [HugePedia]
snp3D : Map Gene to Disease60592
BioCentury BCIQSCOC
ClinGenSCOC
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD60592
Chemical/Pharm GKB GenePA134972148
Clinical trialSCOC
Miscellaneous
canSAR (ICR)SCOC (select the gene name)
Probes
Litterature
PubMed19 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSCOC
EVEXSCOC
GoPubMedSCOC
iHOPSCOC
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:37:22 CEST 2017

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