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SCP2D1 (SCP2 sterol binding domain containing 1)

Identity

Alias_namesC20orf79
chromosome 20 open reading frame 79
SCP2 sterol-binding domain containing 1
Alias_symbol (synonym)dJ1068E13.2
HSD22
Other alias
HGNC (Hugo) SCP2D1
LocusID (NCBI) 140856
Atlas_Id 73055
Location 20p11.23  [Link to chromosome band 20p11]
Location_base_pair Starts at 18813726 and ends at 18814391 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SCP2D1   16211
Cards
Entrez_Gene (NCBI)SCP2D1  140856  SCP2 sterol binding domain containing 1
AliasesC20orf79; HSD22; dJ1068E13.2
GeneCards (Weizmann)SCP2D1
Ensembl hg19 (Hinxton)ENSG00000132631 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000132631 [Gene_View]  chr20:18813726-18814391 [Contig_View]  SCP2D1 [Vega]
ICGC DataPortalENSG00000132631
TCGA cBioPortalSCP2D1
AceView (NCBI)SCP2D1
Genatlas (Paris)SCP2D1
WikiGenes140856
SOURCE (Princeton)SCP2D1
Genetics Home Reference (NIH)SCP2D1
Genomic and cartography
GoldenPath hg38 (UCSC)SCP2D1  -     chr20:18813726-18814391 +  20p11.23   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SCP2D1  -     20p11.23   [Description]    (hg19-Feb_2009)
EnsemblSCP2D1 - 20p11.23 [CytoView hg19]  SCP2D1 - 20p11.23 [CytoView hg38]
Mapping of homologs : NCBISCP2D1 [Mapview hg19]  SCP2D1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF418568 AF418570 AK130970 AY248902 BC105121
RefSeq transcript (Entrez)NM_178483
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SCP2D1
Cluster EST : UnigeneHs.112794 [ NCBI ]
CGAP (NCI)Hs.112794
Alternative Splicing GalleryENSG00000132631
Gene ExpressionSCP2D1 [ NCBI-GEO ]   SCP2D1 [ EBI - ARRAY_EXPRESS ]   SCP2D1 [ SEEK ]   SCP2D1 [ MEM ]
Gene Expression Viewer (FireBrowse)SCP2D1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)140856
GTEX Portal (Tissue expression)SCP2D1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UJQ7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UJQ7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UJQ7
Splice isoforms : SwissVarQ9UJQ7
PhosPhoSitePlusQ9UJQ7
Domains : Interpro (EBI)SCP2_sterol-bd_dom   
Domain families : Pfam (Sanger)SCP2 (PF02036)   
Domain families : Pfam (NCBI)pfam02036   
Conserved Domain (NCBI)SCP2D1
DMDM Disease mutations140856
Blocks (Seattle)SCP2D1
SuperfamilyQ9UJQ7
Human Protein AtlasENSG00000132631
Peptide AtlasQ9UJQ7
HPRD12785
IPIIPI00020830   
Protein Interaction databases
DIP (DOE-UCLA)Q9UJQ7
IntAct (EBI)Q9UJQ7
FunCoupENSG00000132631
BioGRIDSCP2D1
STRING (EMBL)SCP2D1
ZODIACSCP2D1
Ontologies - Pathways
QuickGOQ9UJQ7
Ontology : AmiGOsteroid biosynthetic process  sterol transporter activity  phospholipid transport  cholesterol transport  sterol binding  
Ontology : EGO-EBIsteroid biosynthetic process  sterol transporter activity  phospholipid transport  cholesterol transport  sterol binding  
NDEx NetworkSCP2D1
Atlas of Cancer Signalling NetworkSCP2D1
Wikipedia pathwaysSCP2D1
Orthology - Evolution
OrthoDB140856
GeneTree (enSembl)ENSG00000132631
Phylogenetic Trees/Animal Genes : TreeFamSCP2D1
HOVERGENQ9UJQ7
HOGENOMQ9UJQ7
Homologs : HomoloGeneSCP2D1
Homology/Alignments : Family Browser (UCSC)SCP2D1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSCP2D1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SCP2D1
dbVarSCP2D1
ClinVarSCP2D1
1000_GenomesSCP2D1 
Exome Variant ServerSCP2D1
ExAC (Exome Aggregation Consortium)SCP2D1 (select the gene name)
Genetic variants : HAPMAP140856
Genomic Variants (DGV)SCP2D1 [DGVbeta]
DECIPHERSCP2D1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSCP2D1 
Mutations
ICGC Data PortalSCP2D1 
TCGA Data PortalSCP2D1 
Broad Tumor PortalSCP2D1
OASIS PortalSCP2D1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDSCP2D1
BioMutasearch SCP2D1
DgiDB (Drug Gene Interaction Database)SCP2D1
DoCM (Curated mutations)SCP2D1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SCP2D1 (select a term)
intoGenSCP2D1
Cancer3DSCP2D1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenSCP2D1
Genetic Testing Registry SCP2D1
NextProtQ9UJQ7 [Medical]
TSGene140856
GENETestsSCP2D1
Target ValidationSCP2D1
Huge Navigator SCP2D1 [HugePedia]
snp3D : Map Gene to Disease140856
BioCentury BCIQSCP2D1
ClinGenSCP2D1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD140856
Chemical/Pharm GKB GenePA25788
Clinical trialSCP2D1
Miscellaneous
canSAR (ICR)SCP2D1 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSCP2D1
EVEXSCP2D1
GoPubMedSCP2D1
iHOPSCP2D1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:40:08 CEST 2017

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