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SCPEP1 (serine carboxypeptidase 1)

Identity

Alias_symbol (synonym)RISC
Other aliasHSCP1
HGNC (Hugo) SCPEP1
LocusID (NCBI) 59342
Atlas_Id 73056
Location 17q22  [Link to chromosome band 17q22]
Location_base_pair Starts at 55055468 and ends at 55084129 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
CSNK1D (17q25.3) / SCPEP1 (17q22)RNF168 (3q29) / SCPEP1 (17q22)SCPEP1 (17q22) / SCPEP1 (17q22)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SCPEP1   29507
Cards
Entrez_Gene (NCBI)SCPEP1  59342  serine carboxypeptidase 1
AliasesHSCP1; RISC
GeneCards (Weizmann)SCPEP1
Ensembl hg19 (Hinxton)ENSG00000121064 [Gene_View]  chr17:55055468-55084129 [Contig_View]  SCPEP1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000121064 [Gene_View]  chr17:55055468-55084129 [Contig_View]  SCPEP1 [Vega]
ICGC DataPortalENSG00000121064
TCGA cBioPortalSCPEP1
AceView (NCBI)SCPEP1
Genatlas (Paris)SCPEP1
WikiGenes59342
SOURCE (Princeton)SCPEP1
Genetics Home Reference (NIH)SCPEP1
Genomic and cartography
GoldenPath hg19 (UCSC)SCPEP1  -     chr17:55055468-55084129 +  17q22   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SCPEP1  -     17q22   [Description]    (hg38-Dec_2013)
EnsemblSCPEP1 - 17q22 [CytoView hg19]  SCPEP1 - 17q22 [CytoView hg38]
Mapping of homologs : NCBISCPEP1 [Mapview hg19]  SCPEP1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF113214 AF265441 AF282618 AK027373 AK092928
RefSeq transcript (Entrez)NM_021626
RefSeq genomic (Entrez)NC_000017 NC_018928 NT_010783 NW_004929407
Consensus coding sequences : CCDS (NCBI)SCPEP1
Cluster EST : UnigeneHs.514950 [ NCBI ]
CGAP (NCI)Hs.514950
Alternative Splicing GalleryENSG00000121064
Gene ExpressionSCPEP1 [ NCBI-GEO ]   SCPEP1 [ EBI - ARRAY_EXPRESS ]   SCPEP1 [ SEEK ]   SCPEP1 [ MEM ]
Gene Expression Viewer (FireBrowse)SCPEP1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)59342
GTEX Portal (Tissue expression)SCPEP1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9HB40   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9HB40  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9HB40
Splice isoforms : SwissVarQ9HB40
Catalytic activity : Enzyme3.4.16.- [ Enzyme-Expasy ]   3.4.16.-3.4.16.- [ IntEnz-EBI ]   3.4.16.- [ BRENDA ]   3.4.16.- [ KEGG ]   
PhosPhoSitePlusQ9HB40
Domaine pattern : Prosite (Expaxy)CARBOXYPEPT_SER_SER (PS00131)   
Domains : Interpro (EBI)AB_hydrolase    Peptidase_S10    Peptidase_S10_AS   
Domain families : Pfam (Sanger)Peptidase_S10 (PF00450)   
Domain families : Pfam (NCBI)pfam00450   
Conserved Domain (NCBI)SCPEP1
DMDM Disease mutations59342
Blocks (Seattle)SCPEP1
SuperfamilyQ9HB40
Human Protein AtlasENSG00000121064
Peptide AtlasQ9HB40
HPRD10194
IPIIPI00012426   IPI00477895   
Protein Interaction databases
DIP (DOE-UCLA)Q9HB40
IntAct (EBI)Q9HB40
FunCoupENSG00000121064
BioGRIDSCPEP1
STRING (EMBL)SCPEP1
ZODIACSCPEP1
Ontologies - Pathways
QuickGOQ9HB40
Ontology : AmiGOserine-type carboxypeptidase activity  cytosol  proteolysis  retinoic acid metabolic process  negative regulation of blood pressure  positive regulation of vasodilation  extracellular exosome  
Ontology : EGO-EBIserine-type carboxypeptidase activity  cytosol  proteolysis  retinoic acid metabolic process  negative regulation of blood pressure  positive regulation of vasodilation  extracellular exosome  
NDEx NetworkSCPEP1
Atlas of Cancer Signalling NetworkSCPEP1
Wikipedia pathwaysSCPEP1
Orthology - Evolution
OrthoDB59342
GeneTree (enSembl)ENSG00000121064
Phylogenetic Trees/Animal Genes : TreeFamSCPEP1
HOVERGENQ9HB40
HOGENOMQ9HB40
Homologs : HomoloGeneSCPEP1
Homology/Alignments : Family Browser (UCSC)SCPEP1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSCPEP1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SCPEP1
dbVarSCPEP1
ClinVarSCPEP1
1000_GenomesSCPEP1 
Exome Variant ServerSCPEP1
ExAC (Exome Aggregation Consortium)SCPEP1 (select the gene name)
Genetic variants : HAPMAP59342
Genomic Variants (DGV)SCPEP1 [DGVbeta]
DECIPHER (Syndromes)17:55055468-55084129  ENSG00000121064
CONAN: Copy Number AnalysisSCPEP1 
Mutations
ICGC Data PortalSCPEP1 
TCGA Data PortalSCPEP1 
Broad Tumor PortalSCPEP1
OASIS PortalSCPEP1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSCPEP1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSCPEP1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SCPEP1
DgiDB (Drug Gene Interaction Database)SCPEP1
DoCM (Curated mutations)SCPEP1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SCPEP1 (select a term)
intoGenSCPEP1
Cancer3DSCPEP1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenSCPEP1
Genetic Testing Registry SCPEP1
NextProtQ9HB40 [Medical]
TSGene59342
GENETestsSCPEP1
Huge Navigator SCPEP1 [HugePedia]
snp3D : Map Gene to Disease59342
BioCentury BCIQSCPEP1
ClinGenSCPEP1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD59342
Chemical/Pharm GKB GenePA134960711
Clinical trialSCPEP1
Miscellaneous
canSAR (ICR)SCPEP1 (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSCPEP1
EVEXSCPEP1
GoPubMedSCPEP1
iHOPSCPEP1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:42:34 CET 2017

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