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SCRG1 (stimulator of chondrogenesis 1)

Identity

Alias_symbol (synonym)SCRG-1
Other alias
HGNC (Hugo) SCRG1
LocusID (NCBI) 11341
Atlas_Id 73057
Location 4q34.1  [Link to chromosome band 4q34]
Location_base_pair Starts at 173388148 and ends at 173519238 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
SCRG1 (4q34.1) / TRIM5 (11p15.4)TYW3 (1p31.1) / SCRG1 (4q34.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SCRG1   17036
Cards
Entrez_Gene (NCBI)SCRG1  11341  stimulator of chondrogenesis 1
AliasesSCRG-1
GeneCards (Weizmann)SCRG1
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr4:173388148-173519238 [Contig_View]  SCRG1 [Vega]
TCGA cBioPortalSCRG1
AceView (NCBI)SCRG1
Genatlas (Paris)SCRG1
WikiGenes11341
SOURCE (Princeton)SCRG1
Genetics Home Reference (NIH)SCRG1
Genomic and cartography
GoldenPath hg38 (UCSC)SCRG1  -     chr4:173388148-173519238 -  4q34.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SCRG1  -     4q34.1   [Description]    (hg19-Feb_2009)
EnsemblSCRG1 - 4q34.1 [CytoView hg19]  SCRG1 - 4q34.1 [CytoView hg38]
Mapping of homologs : NCBISCRG1 [Mapview hg19]  SCRG1 [Mapview hg38]
OMIM603163   
Gene and transcription
Genbank (Entrez)AJ224677 AK312146 AY359040 BC017583 BC067829
RefSeq transcript (Entrez)NM_001329597 NM_007281
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SCRG1
Cluster EST : UnigeneHs.7122 [ NCBI ]
CGAP (NCI)Hs.7122
Gene ExpressionSCRG1 [ NCBI-GEO ]   SCRG1 [ EBI - ARRAY_EXPRESS ]   SCRG1 [ SEEK ]   SCRG1 [ MEM ]
Gene Expression Viewer (FireBrowse)SCRG1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)11341
GTEX Portal (Tissue expression)SCRG1
Protein : pattern, domain, 3D structure
UniProt/SwissProtO75711   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO75711  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO75711
Splice isoforms : SwissVarO75711
PhosPhoSitePlusO75711
Domains : Interpro (EBI)SCRG1   
Domain families : Pfam (Sanger)SCRG1 (PF15224)   
Domain families : Pfam (NCBI)pfam15224   
Conserved Domain (NCBI)SCRG1
DMDM Disease mutations11341
Blocks (Seattle)SCRG1
SuperfamilyO75711
Peptide AtlasO75711
HPRD11932
IPIIPI00026800   IPI00964505   
Protein Interaction databases
DIP (DOE-UCLA)O75711
IntAct (EBI)O75711
BioGRIDSCRG1
STRING (EMBL)SCRG1
ZODIACSCRG1
Ontologies - Pathways
QuickGOO75711
Ontology : AmiGOprotein binding  extracellular space  Golgi apparatus  nervous system development  neuron projection terminus  
Ontology : EGO-EBIprotein binding  extracellular space  Golgi apparatus  nervous system development  neuron projection terminus  
NDEx NetworkSCRG1
Atlas of Cancer Signalling NetworkSCRG1
Wikipedia pathwaysSCRG1
Orthology - Evolution
OrthoDB11341
Phylogenetic Trees/Animal Genes : TreeFamSCRG1
HOVERGENO75711
HOGENOMO75711
Homologs : HomoloGeneSCRG1
Homology/Alignments : Family Browser (UCSC)SCRG1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSCRG1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SCRG1
dbVarSCRG1
ClinVarSCRG1
1000_GenomesSCRG1 
Exome Variant ServerSCRG1
ExAC (Exome Aggregation Consortium)SCRG1 (select the gene name)
Genetic variants : HAPMAP11341
Genomic Variants (DGV)SCRG1 [DGVbeta]
DECIPHERSCRG1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSCRG1 
Mutations
ICGC Data PortalSCRG1 
TCGA Data PortalSCRG1 
Broad Tumor PortalSCRG1
OASIS PortalSCRG1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSCRG1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSCRG1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SCRG1
DgiDB (Drug Gene Interaction Database)SCRG1
DoCM (Curated mutations)SCRG1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SCRG1 (select a term)
intoGenSCRG1
Cancer3DSCRG1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM603163   
Orphanet
MedgenSCRG1
Genetic Testing Registry SCRG1
NextProtO75711 [Medical]
TSGene11341
GENETestsSCRG1
Target ValidationSCRG1
Huge Navigator SCRG1 [HugePedia]
snp3D : Map Gene to Disease11341
BioCentury BCIQSCRG1
ClinGenSCRG1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD11341
Chemical/Pharm GKB GenePA165664478
Clinical trialSCRG1
Miscellaneous
canSAR (ICR)SCRG1 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSCRG1
EVEXSCRG1
GoPubMedSCRG1
iHOPSCRG1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:37:22 CEST 2017

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