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SCRN1 (secernin 1)

Identity

Alias_symbol (synonym)KIAA0193
Other aliasSES1
HGNC (Hugo) SCRN1
LocusID (NCBI) 9805
Atlas_Id 51454
Location 7p14.3  [Link to chromosome band 7p14]
Location_base_pair Starts at 29920103 and ends at 29990118 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
DDX50 (10q22.1) / SCRN1 (7p14.3)DFNA5 (7p15.3) / SCRN1 (7p14.3)LRRC75A-AS1 (17p11.2) / SCRN1 (7p14.3)
SCRN1 (7p14.3) / WDR53 (3q29)SCRN1 7p14.3 / WDR53 3q29

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SCRN1   22192
Cards
Entrez_Gene (NCBI)SCRN1  9805  secernin 1
AliasesSES1
GeneCards (Weizmann)SCRN1
Ensembl hg19 (Hinxton)ENSG00000136193 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000136193 [Gene_View]  chr7:29920103-29990118 [Contig_View]  SCRN1 [Vega]
ICGC DataPortalENSG00000136193
TCGA cBioPortalSCRN1
AceView (NCBI)SCRN1
Genatlas (Paris)SCRN1
WikiGenes9805
SOURCE (Princeton)SCRN1
Genetics Home Reference (NIH)SCRN1
Genomic and cartography
GoldenPath hg38 (UCSC)SCRN1  -     chr7:29920103-29990118 -  7p14.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SCRN1  -     7p14.3   [Description]    (hg19-Feb_2009)
EnsemblSCRN1 - 7p14.3 [CytoView hg19]  SCRN1 - 7p14.3 [CytoView hg38]
Mapping of homologs : NCBISCRN1 [Mapview hg19]  SCRN1 [Mapview hg38]
OMIM614965   
Gene and transcription
Genbank (Entrez)AA910381 AB071705 AK289514 AK293462 AK294891
RefSeq transcript (Entrez)NM_001145513 NM_001145514 NM_001145515 NM_014766
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SCRN1
Cluster EST : UnigeneHs.520740 [ NCBI ]
CGAP (NCI)Hs.520740
Alternative Splicing GalleryENSG00000136193
Gene ExpressionSCRN1 [ NCBI-GEO ]   SCRN1 [ EBI - ARRAY_EXPRESS ]   SCRN1 [ SEEK ]   SCRN1 [ MEM ]
Gene Expression Viewer (FireBrowse)SCRN1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9805
GTEX Portal (Tissue expression)SCRN1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ12765   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ12765  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ12765
Splice isoforms : SwissVarQ12765
PhosPhoSitePlusQ12765
Domains : Interpro (EBI)Peptidase_C69   
Domain families : Pfam (Sanger)Peptidase_C69 (PF03577)   
Domain families : Pfam (NCBI)pfam03577   
Conserved Domain (NCBI)SCRN1
DMDM Disease mutations9805
Blocks (Seattle)SCRN1
SuperfamilyQ12765
Human Protein AtlasENSG00000136193
Peptide AtlasQ12765
HPRD15304
IPIIPI00289862   IPI00657698   IPI00909070   IPI00917523   IPI00917645   IPI00917232   IPI00917382   IPI01010498   
Protein Interaction databases
DIP (DOE-UCLA)Q12765
IntAct (EBI)Q12765
FunCoupENSG00000136193
BioGRIDSCRN1
STRING (EMBL)SCRN1
ZODIACSCRN1
Ontologies - Pathways
QuickGOQ12765
Ontology : AmiGOmolecular_function  protein binding  nucleus  cytoplasm  proteolysis  exocytosis  exocytosis  dipeptidase activity  nuclear membrane  
Ontology : EGO-EBImolecular_function  protein binding  nucleus  cytoplasm  proteolysis  exocytosis  exocytosis  dipeptidase activity  nuclear membrane  
NDEx NetworkSCRN1
Atlas of Cancer Signalling NetworkSCRN1
Wikipedia pathwaysSCRN1
Orthology - Evolution
OrthoDB9805
GeneTree (enSembl)ENSG00000136193
Phylogenetic Trees/Animal Genes : TreeFamSCRN1
HOVERGENQ12765
HOGENOMQ12765
Homologs : HomoloGeneSCRN1
Homology/Alignments : Family Browser (UCSC)SCRN1
Gene fusions - Rearrangements
Fusion : MitelmanSCRN1/WDR53 [7p14.3/3q29]  
Fusion: TCGASCRN1 7p14.3 WDR53 3q29 LUSC
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSCRN1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SCRN1
dbVarSCRN1
ClinVarSCRN1
1000_GenomesSCRN1 
Exome Variant ServerSCRN1
ExAC (Exome Aggregation Consortium)SCRN1 (select the gene name)
Genetic variants : HAPMAP9805
Genomic Variants (DGV)SCRN1 [DGVbeta]
DECIPHERSCRN1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSCRN1 
Mutations
ICGC Data PortalSCRN1 
TCGA Data PortalSCRN1 
Broad Tumor PortalSCRN1
OASIS PortalSCRN1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSCRN1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSCRN1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SCRN1
DgiDB (Drug Gene Interaction Database)SCRN1
DoCM (Curated mutations)SCRN1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SCRN1 (select a term)
intoGenSCRN1
Cancer3DSCRN1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM614965   
Orphanet
MedgenSCRN1
Genetic Testing Registry SCRN1
NextProtQ12765 [Medical]
TSGene9805
GENETestsSCRN1
Target ValidationSCRN1
Huge Navigator SCRN1 [HugePedia]
snp3D : Map Gene to Disease9805
BioCentury BCIQSCRN1
ClinGenSCRN1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9805
Chemical/Pharm GKB GenePA134874373
Clinical trialSCRN1
Miscellaneous
canSAR (ICR)SCRN1 (select the gene name)
Probes
Litterature
PubMed21 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSCRN1
EVEXSCRN1
GoPubMedSCRN1
iHOPSCRN1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:54:37 CEST 2017

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