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SCRN2 (secernin 2)

Identity

Other aliasSes2
HGNC (Hugo) SCRN2
LocusID (NCBI) 90507
Atlas_Id 73058
Location 17q21.32  [Link to chromosome band 17q21]
Location_base_pair Starts at 47837681 and ends at 47841333 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
SCRN2 (17q21.32) / SKAP1 (17q21.32)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SCRN2   30381
Cards
Entrez_Gene (NCBI)SCRN2  90507  secernin 2
AliasesSes2
GeneCards (Weizmann)SCRN2
Ensembl hg19 (Hinxton)ENSG00000141295 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000141295 [Gene_View]  chr17:47837681-47841333 [Contig_View]  SCRN2 [Vega]
ICGC DataPortalENSG00000141295
TCGA cBioPortalSCRN2
AceView (NCBI)SCRN2
Genatlas (Paris)SCRN2
WikiGenes90507
SOURCE (Princeton)SCRN2
Genetics Home Reference (NIH)SCRN2
Genomic and cartography
GoldenPath hg38 (UCSC)SCRN2  -     chr17:47837681-47841333 -  17q21.32   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SCRN2  -     17q21.32   [Description]    (hg19-Feb_2009)
EnsemblSCRN2 - 17q21.32 [CytoView hg19]  SCRN2 - 17q21.32 [CytoView hg38]
Mapping of homologs : NCBISCRN2 [Mapview hg19]  SCRN2 [Mapview hg38]
OMIM614966   
Gene and transcription
Genbank (Entrez)AK290646 AK303835 AK308989 AW452880 BC002980
RefSeq transcript (Entrez)NM_001145023 NM_138355
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SCRN2
Cluster EST : UnigeneHs.239718 [ NCBI ]
CGAP (NCI)Hs.239718
Alternative Splicing GalleryENSG00000141295
Gene ExpressionSCRN2 [ NCBI-GEO ]   SCRN2 [ EBI - ARRAY_EXPRESS ]   SCRN2 [ SEEK ]   SCRN2 [ MEM ]
Gene Expression Viewer (FireBrowse)SCRN2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)90507
GTEX Portal (Tissue expression)SCRN2
Human Protein AtlasENSG00000141295-SCRN2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96FV2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96FV2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96FV2
Splice isoforms : SwissVarQ96FV2
PhosPhoSitePlusQ96FV2
Domains : Interpro (EBI)Peptidase_C69   
Domain families : Pfam (Sanger)Peptidase_C69 (PF03577)   
Domain families : Pfam (NCBI)pfam03577   
Conserved Domain (NCBI)SCRN2
DMDM Disease mutations90507
Blocks (Seattle)SCRN2
SuperfamilyQ96FV2
Human Protein Atlas [tissue]ENSG00000141295-SCRN2 [tissue]
Peptide AtlasQ96FV2
HPRD10213
IPIIPI00062266   IPI00402502   IPI00981401   
Protein Interaction databases
DIP (DOE-UCLA)Q96FV2
IntAct (EBI)Q96FV2
FunCoupENSG00000141295
BioGRIDSCRN2
STRING (EMBL)SCRN2
ZODIACSCRN2
Ontologies - Pathways
QuickGOQ96FV2
Ontology : AmiGOmolecular_function  protein binding  proteolysis  exocytosis  biological_process  dipeptidase activity  extracellular exosome  
Ontology : EGO-EBImolecular_function  protein binding  proteolysis  exocytosis  biological_process  dipeptidase activity  extracellular exosome  
NDEx NetworkSCRN2
Atlas of Cancer Signalling NetworkSCRN2
Wikipedia pathwaysSCRN2
Orthology - Evolution
OrthoDB90507
GeneTree (enSembl)ENSG00000141295
Phylogenetic Trees/Animal Genes : TreeFamSCRN2
HOVERGENQ96FV2
HOGENOMQ96FV2
Homologs : HomoloGeneSCRN2
Homology/Alignments : Family Browser (UCSC)SCRN2
Gene fusions - Rearrangements
Tumor Fusion PortalSCRN2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSCRN2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SCRN2
dbVarSCRN2
ClinVarSCRN2
1000_GenomesSCRN2 
Exome Variant ServerSCRN2
ExAC (Exome Aggregation Consortium)ENSG00000141295
GNOMAD BrowserENSG00000141295
Genetic variants : HAPMAP90507
Genomic Variants (DGV)SCRN2 [DGVbeta]
DECIPHERSCRN2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSCRN2 
Mutations
ICGC Data PortalSCRN2 
TCGA Data PortalSCRN2 
Broad Tumor PortalSCRN2
OASIS PortalSCRN2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSCRN2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSCRN2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SCRN2
DgiDB (Drug Gene Interaction Database)SCRN2
DoCM (Curated mutations)SCRN2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SCRN2 (select a term)
intoGenSCRN2
Cancer3DSCRN2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM614966   
Orphanet
DisGeNETSCRN2
MedgenSCRN2
Genetic Testing Registry SCRN2
NextProtQ96FV2 [Medical]
TSGene90507
GENETestsSCRN2
Target ValidationSCRN2
Huge Navigator SCRN2 [HugePedia]
snp3D : Map Gene to Disease90507
BioCentury BCIQSCRN2
ClinGenSCRN2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD90507
Chemical/Pharm GKB GenePA134964266
Clinical trialSCRN2
Miscellaneous
canSAR (ICR)SCRN2 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSCRN2
EVEXSCRN2
GoPubMedSCRN2
iHOPSCRN2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:36:45 CET 2017

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