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SCRN3 (secernin 3)

Identity

Alias_symbol (synonym)FLJ23142
Other aliasSES3
HGNC (Hugo) SCRN3
LocusID (NCBI) 79634
Atlas_Id 73059
Location 2q31.1  [Link to chromosome band 2q31]
Location_base_pair Starts at 175260457 and ends at 175294303 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
MPP5 (14q23.3) / SCRN3 (2q31.1)SMOC2 (6q27) / SCRN3 (2q31.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SCRN3   30382
Cards
Entrez_Gene (NCBI)SCRN3  79634  secernin 3
AliasesSES3
GeneCards (Weizmann)SCRN3
Ensembl hg19 (Hinxton)ENSG00000144306 [Gene_View]  chr2:175260457-175294303 [Contig_View]  SCRN3 [Vega]
Ensembl hg38 (Hinxton)ENSG00000144306 [Gene_View]  chr2:175260457-175294303 [Contig_View]  SCRN3 [Vega]
ICGC DataPortalENSG00000144306
TCGA cBioPortalSCRN3
AceView (NCBI)SCRN3
Genatlas (Paris)SCRN3
WikiGenes79634
SOURCE (Princeton)SCRN3
Genetics Home Reference (NIH)SCRN3
Genomic and cartography
GoldenPath hg19 (UCSC)SCRN3  -     chr2:175260457-175294303 +  2q31.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SCRN3  -     2q31.1   [Description]    (hg38-Dec_2013)
EnsemblSCRN3 - 2q31.1 [CytoView hg19]  SCRN3 - 2q31.1 [CytoView hg38]
Mapping of homologs : NCBISCRN3 [Mapview hg19]  SCRN3 [Mapview hg38]
OMIM614967   
Gene and transcription
Genbank (Entrez)AA227619 AF279776 AK026795 AK057912 AK295357
RefSeq transcript (Entrez)NM_001193528 NM_024583
RefSeq genomic (Entrez)NC_000002 NC_018913 NT_005403 NW_004929305
Consensus coding sequences : CCDS (NCBI)SCRN3
Cluster EST : UnigeneHs.470679 [ NCBI ]
CGAP (NCI)Hs.470679
Alternative Splicing GalleryENSG00000144306
Gene ExpressionSCRN3 [ NCBI-GEO ]   SCRN3 [ EBI - ARRAY_EXPRESS ]   SCRN3 [ SEEK ]   SCRN3 [ MEM ]
Gene Expression Viewer (FireBrowse)SCRN3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79634
GTEX Portal (Tissue expression)SCRN3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ0VDG4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ0VDG4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ0VDG4
Splice isoforms : SwissVarQ0VDG4
PhosPhoSitePlusQ0VDG4
Domains : Interpro (EBI)Peptidase_C69   
Domain families : Pfam (Sanger)Peptidase_C69 (PF03577)   
Domain families : Pfam (NCBI)pfam03577   
Conserved Domain (NCBI)SCRN3
DMDM Disease mutations79634
Blocks (Seattle)SCRN3
SuperfamilyQ0VDG4
Human Protein AtlasENSG00000144306
Peptide AtlasQ0VDG4
HPRD18028
IPIIPI00002311   IPI00916232   IPI00917308   IPI00916555   IPI00916931   IPI00916838   IPI00917053   
Protein Interaction databases
DIP (DOE-UCLA)Q0VDG4
IntAct (EBI)Q0VDG4
FunCoupENSG00000144306
BioGRIDSCRN3
STRING (EMBL)SCRN3
ZODIACSCRN3
Ontologies - Pathways
QuickGOQ0VDG4
Ontology : AmiGOcell  proteolysis  exocytosis  dipeptidase activity  
Ontology : EGO-EBIcell  proteolysis  exocytosis  dipeptidase activity  
NDEx NetworkSCRN3
Atlas of Cancer Signalling NetworkSCRN3
Wikipedia pathwaysSCRN3
Orthology - Evolution
OrthoDB79634
GeneTree (enSembl)ENSG00000144306
Phylogenetic Trees/Animal Genes : TreeFamSCRN3
HOVERGENQ0VDG4
HOGENOMQ0VDG4
Homologs : HomoloGeneSCRN3
Homology/Alignments : Family Browser (UCSC)SCRN3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSCRN3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SCRN3
dbVarSCRN3
ClinVarSCRN3
1000_GenomesSCRN3 
Exome Variant ServerSCRN3
ExAC (Exome Aggregation Consortium)SCRN3 (select the gene name)
Genetic variants : HAPMAP79634
Genomic Variants (DGV)SCRN3 [DGVbeta]
DECIPHER (Syndromes)2:175260457-175294303  ENSG00000144306
CONAN: Copy Number AnalysisSCRN3 
Mutations
ICGC Data PortalSCRN3 
TCGA Data PortalSCRN3 
Broad Tumor PortalSCRN3
OASIS PortalSCRN3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSCRN3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSCRN3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SCRN3
DgiDB (Drug Gene Interaction Database)SCRN3
DoCM (Curated mutations)SCRN3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SCRN3 (select a term)
intoGenSCRN3
Cancer3DSCRN3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM614967   
Orphanet
MedgenSCRN3
Genetic Testing Registry SCRN3
NextProtQ0VDG4 [Medical]
TSGene79634
GENETestsSCRN3
Huge Navigator SCRN3 [HugePedia]
snp3D : Map Gene to Disease79634
BioCentury BCIQSCRN3
ClinGenSCRN3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79634
Chemical/Pharm GKB GenePA134974313
Clinical trialSCRN3
Miscellaneous
canSAR (ICR)SCRN3 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSCRN3
EVEXSCRN3
GoPubMedSCRN3
iHOPSCRN3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:42:35 CET 2017

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