Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

SCRT1 (scratch family transcriptional repressor 1)

Identity

Alias_namesscratch (drosophila homolog) 1, zinc finger protein
scratch homolog 1, zinc finger protein (Drosophila)
Alias_symbol (synonym)DKFZp547F072
ZNF898
Other aliasSCRT
HGNC (Hugo) SCRT1
LocusID (NCBI) 83482
Atlas_Id 42219
Location 8q24.3  [Link to chromosome band 8q24]
Location_base_pair Starts at 144330565 and ends at 144336281 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SCRT1   15950
Cards
Entrez_Gene (NCBI)SCRT1  83482  scratch family transcriptional repressor 1
AliasesSCRT; ZNF898
GeneCards (Weizmann)SCRT1
Ensembl hg19 (Hinxton)ENSG00000261678 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000261678 [Gene_View]  chr8:144330565-144336281 [Contig_View]  SCRT1 [Vega]
ICGC DataPortalENSG00000261678
TCGA cBioPortalSCRT1
AceView (NCBI)SCRT1
Genatlas (Paris)SCRT1
WikiGenes83482
SOURCE (Princeton)SCRT1
Genetics Home Reference (NIH)SCRT1
Genomic and cartography
GoldenPath hg38 (UCSC)SCRT1  -     chr8:144330565-144336281 -  8q24.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SCRT1  -     8q24.3   [Description]    (hg19-Feb_2009)
EnsemblSCRT1 - 8q24.3 [CytoView hg19]  SCRT1 - 8q24.3 [CytoView hg38]
Mapping of homologs : NCBISCRT1 [Mapview hg19]  SCRT1 [Mapview hg38]
OMIM605858   
Gene and transcription
Genbank (Entrez)AL512683 AY014996 BC014675 BC024967 BC093806
RefSeq transcript (Entrez)NM_031309
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SCRT1
Cluster EST : UnigeneHs.31746 [ NCBI ]
CGAP (NCI)Hs.31746
Alternative Splicing GalleryENSG00000261678
Gene ExpressionSCRT1 [ NCBI-GEO ]   SCRT1 [ EBI - ARRAY_EXPRESS ]   SCRT1 [ SEEK ]   SCRT1 [ MEM ]
Gene Expression Viewer (FireBrowse)SCRT1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)83482
GTEX Portal (Tissue expression)SCRT1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BWW7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BWW7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BWW7
Splice isoforms : SwissVarQ9BWW7
PhosPhoSitePlusQ9BWW7
Domaine pattern : Prosite (Expaxy)ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)zf-C2H2 (PF00096)    zf-C2H2_6 (PF13912)   
Domain families : Pfam (NCBI)pfam00096    pfam13912   
Domain families : Smart (EMBL)ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)SCRT1
DMDM Disease mutations83482
Blocks (Seattle)SCRT1
SuperfamilyQ9BWW7
Human Protein AtlasENSG00000261678
Peptide AtlasQ9BWW7
HPRD16166
IPIIPI00010452   
Protein Interaction databases
DIP (DOE-UCLA)Q9BWW7
IntAct (EBI)Q9BWW7
FunCoupENSG00000261678
BioGRIDSCRT1
STRING (EMBL)SCRT1
ZODIACSCRT1
Ontologies - Pathways
QuickGOQ9BWW7
Ontology : AmiGOnegative regulation of transcription from RNA polymerase II promoter  DNA binding  transcription factor activity, sequence-specific DNA binding  transcription, DNA-templated  regulation of transcription, DNA-templated  nuclear body  metal ion binding  regulation of neuron migration  
Ontology : EGO-EBInegative regulation of transcription from RNA polymerase II promoter  DNA binding  transcription factor activity, sequence-specific DNA binding  transcription, DNA-templated  regulation of transcription, DNA-templated  nuclear body  metal ion binding  regulation of neuron migration  
NDEx NetworkSCRT1
Atlas of Cancer Signalling NetworkSCRT1
Wikipedia pathwaysSCRT1
Orthology - Evolution
OrthoDB83482
GeneTree (enSembl)ENSG00000261678
Phylogenetic Trees/Animal Genes : TreeFamSCRT1
HOVERGENQ9BWW7
HOGENOMQ9BWW7
Homologs : HomoloGeneSCRT1
Homology/Alignments : Family Browser (UCSC)SCRT1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSCRT1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SCRT1
dbVarSCRT1
ClinVarSCRT1
1000_GenomesSCRT1 
Exome Variant ServerSCRT1
ExAC (Exome Aggregation Consortium)SCRT1 (select the gene name)
Genetic variants : HAPMAP83482
Genomic Variants (DGV)SCRT1 [DGVbeta]
DECIPHERSCRT1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSCRT1 
Mutations
ICGC Data PortalSCRT1 
TCGA Data PortalSCRT1 
Broad Tumor PortalSCRT1
OASIS PortalSCRT1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSCRT1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSCRT1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SCRT1
DgiDB (Drug Gene Interaction Database)SCRT1
DoCM (Curated mutations)SCRT1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SCRT1 (select a term)
intoGenSCRT1
Cancer3DSCRT1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM605858   
Orphanet
MedgenSCRT1
Genetic Testing Registry SCRT1
NextProtQ9BWW7 [Medical]
TSGene83482
GENETestsSCRT1
Huge Navigator SCRT1 [HugePedia]
snp3D : Map Gene to Disease83482
BioCentury BCIQSCRT1
ClinGenSCRT1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD83482
Chemical/Pharm GKB GenePA35015
Clinical trialSCRT1
Miscellaneous
canSAR (ICR)SCRT1 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSCRT1
EVEXSCRT1
GoPubMedSCRT1
iHOPSCRT1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri May 19 12:36:21 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.