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SCRT2 (scratch family transcriptional repressor 2)

Identity

Alias_namesscratch (drosophila homolog) 2, zinc finger protein
scratch homolog 2, zinc finger protein (Drosophila)
Alias_symbol (synonym)ZNF898B
Other alias
HGNC (Hugo) SCRT2
LocusID (NCBI) 85508
Atlas_Id 73060
Location 20p13  [Link to chromosome band 20p13]
Location_base_pair Starts at 661596 and ends at 676179 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SCRT2   15952
Cards
Entrez_Gene (NCBI)SCRT2  85508  scratch family transcriptional repressor 2
AliasesZNF898B
GeneCards (Weizmann)SCRT2
Ensembl hg19 (Hinxton)ENSG00000215397 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000215397 [Gene_View]  chr20:661596-676179 [Contig_View]  SCRT2 [Vega]
ICGC DataPortalENSG00000215397
TCGA cBioPortalSCRT2
AceView (NCBI)SCRT2
Genatlas (Paris)SCRT2
WikiGenes85508
SOURCE (Princeton)SCRT2
Genetics Home Reference (NIH)SCRT2
Genomic and cartography
GoldenPath hg38 (UCSC)SCRT2  -     chr20:661596-676179 -  20p13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SCRT2  -     20p13   [Description]    (hg19-Feb_2009)
EnsemblSCRT2 - 20p13 [CytoView hg19]  SCRT2 - 20p13 [CytoView hg38]
Mapping of homologs : NCBISCRT2 [Mapview hg19]  SCRT2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AY129025 BC172245
RefSeq transcript (Entrez)NM_033129
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SCRT2
Cluster EST : UnigeneHs.355284 [ NCBI ]
CGAP (NCI)Hs.355284
Alternative Splicing GalleryENSG00000215397
Gene ExpressionSCRT2 [ NCBI-GEO ]   SCRT2 [ EBI - ARRAY_EXPRESS ]   SCRT2 [ SEEK ]   SCRT2 [ MEM ]
Gene Expression Viewer (FireBrowse)SCRT2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)85508
GTEX Portal (Tissue expression)SCRT2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NQ03   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NQ03  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NQ03
Splice isoforms : SwissVarQ9NQ03
PhosPhoSitePlusQ9NQ03
Domaine pattern : Prosite (Expaxy)ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)zf-C2H2 (PF00096)    zf-C2H2_6 (PF13912)   
Domain families : Pfam (NCBI)pfam00096    pfam13912   
Domain families : Smart (EMBL)ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)SCRT2
DMDM Disease mutations85508
Blocks (Seattle)SCRT2
SuperfamilyQ9NQ03
Human Protein AtlasENSG00000215397
Peptide AtlasQ9NQ03
HPRD15305
IPIIPI00376319   
Protein Interaction databases
DIP (DOE-UCLA)Q9NQ03
IntAct (EBI)Q9NQ03
FunCoupENSG00000215397
BioGRIDSCRT2
STRING (EMBL)SCRT2
ZODIACSCRT2
Ontologies - Pathways
QuickGOQ9NQ03
Ontology : AmiGOnegative regulation of transcription from RNA polymerase II promoter  nuclear chromatin  transcriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding  DNA binding  transcription, DNA-templated  metal ion binding  negative regulation of extrinsic apoptotic signaling pathway via death domain receptors  regulation of neuron migration  
Ontology : EGO-EBInegative regulation of transcription from RNA polymerase II promoter  nuclear chromatin  transcriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding  DNA binding  transcription, DNA-templated  metal ion binding  negative regulation of extrinsic apoptotic signaling pathway via death domain receptors  regulation of neuron migration  
NDEx NetworkSCRT2
Atlas of Cancer Signalling NetworkSCRT2
Wikipedia pathwaysSCRT2
Orthology - Evolution
OrthoDB85508
GeneTree (enSembl)ENSG00000215397
Phylogenetic Trees/Animal Genes : TreeFamSCRT2
HOVERGENQ9NQ03
HOGENOMQ9NQ03
Homologs : HomoloGeneSCRT2
Homology/Alignments : Family Browser (UCSC)SCRT2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSCRT2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SCRT2
dbVarSCRT2
ClinVarSCRT2
1000_GenomesSCRT2 
Exome Variant ServerSCRT2
ExAC (Exome Aggregation Consortium)SCRT2 (select the gene name)
Genetic variants : HAPMAP85508
Genomic Variants (DGV)SCRT2 [DGVbeta]
DECIPHERSCRT2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSCRT2 
Mutations
ICGC Data PortalSCRT2 
TCGA Data PortalSCRT2 
Broad Tumor PortalSCRT2
OASIS PortalSCRT2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSCRT2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSCRT2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SCRT2
DgiDB (Drug Gene Interaction Database)SCRT2
DoCM (Curated mutations)SCRT2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SCRT2 (select a term)
intoGenSCRT2
Cancer3DSCRT2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenSCRT2
Genetic Testing Registry SCRT2
NextProtQ9NQ03 [Medical]
TSGene85508
GENETestsSCRT2
Target ValidationSCRT2
Huge Navigator SCRT2 [HugePedia]
snp3D : Map Gene to Disease85508
BioCentury BCIQSCRT2
ClinGenSCRT2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD85508
Chemical/Pharm GKB GenePA35016
Clinical trialSCRT2
Miscellaneous
canSAR (ICR)SCRT2 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSCRT2
EVEXSCRT2
GoPubMedSCRT2
iHOPSCRT2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:37:23 CEST 2017

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