Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

SCTR (secretin receptor)

Identity

Other aliasSR
HGNC (Hugo) SCTR
LocusID (NCBI) 6344
Atlas_Id 42220
Location 2q14.2  [Link to chromosome band 2q14]
Location_base_pair Starts at 119439843 and ends at 119524452 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SCTR   10608
Cards
Entrez_Gene (NCBI)SCTR  6344  secretin receptor
AliasesSR
GeneCards (Weizmann)SCTR
Ensembl hg19 (Hinxton)ENSG00000080293 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000080293 [Gene_View]  chr2:119439843-119524452 [Contig_View]  SCTR [Vega]
ICGC DataPortalENSG00000080293
TCGA cBioPortalSCTR
AceView (NCBI)SCTR
Genatlas (Paris)SCTR
WikiGenes6344
SOURCE (Princeton)SCTR
Genetics Home Reference (NIH)SCTR
Genomic and cartography
GoldenPath hg38 (UCSC)SCTR  -     chr2:119439843-119524452 -  2q14.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SCTR  -     2q14.2   [Description]    (hg19-Feb_2009)
EnsemblSCTR - 2q14.2 [CytoView hg19]  SCTR - 2q14.2 [CytoView hg38]
Mapping of homologs : NCBISCTR [Mapview hg19]  SCTR [Mapview hg38]
OMIM182098   
Gene and transcription
Genbank (Entrez)AK055551 AK314638 AY462218 BC035757 DA930115
RefSeq transcript (Entrez)NM_002980
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SCTR
Cluster EST : UnigeneHs.42091 [ NCBI ]
CGAP (NCI)Hs.42091
Alternative Splicing GalleryENSG00000080293
Gene ExpressionSCTR [ NCBI-GEO ]   SCTR [ EBI - ARRAY_EXPRESS ]   SCTR [ SEEK ]   SCTR [ MEM ]
Gene Expression Viewer (FireBrowse)SCTR [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)6344
GTEX Portal (Tissue expression)SCTR
Protein : pattern, domain, 3D structure
UniProt/SwissProtP47872   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP47872  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP47872
Splice isoforms : SwissVarP47872
PhosPhoSitePlusP47872
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F2_1 (PS00649)    G_PROTEIN_RECEP_F2_2 (PS00650)    G_PROTEIN_RECEP_F2_3 (PS50227)    G_PROTEIN_RECEP_F2_4 (PS50261)   
Domains : Interpro (EBI)GPCR_2-like    GPCR_2_extracellular_dom    GPCR_2_secretin-like    GPCR_2_secretin-like_CS    GPCR_2_secretin_rcpt   
Domain families : Pfam (Sanger)7tm_2 (PF00002)    HRM (PF02793)   
Domain families : Pfam (NCBI)pfam00002    pfam02793   
Domain families : Smart (EMBL)HormR (SM00008)  
Conserved Domain (NCBI)SCTR
DMDM Disease mutations6344
Blocks (Seattle)SCTR
SuperfamilyP47872
Human Protein AtlasENSG00000080293
Peptide AtlasP47872
HPRD01628
IPIIPI00026641   
Protein Interaction databases
DIP (DOE-UCLA)P47872
IntAct (EBI)P47872
FunCoupENSG00000080293
BioGRIDSCTR
STRING (EMBL)SCTR
ZODIACSCTR
Ontologies - Pathways
QuickGOP47872
Ontology : AmiGOcytoplasmic microtubule  plasma membrane  integral component of plasma membrane  cell surface receptor signaling pathway  G-protein coupled receptor signaling pathway  digestion  excretion  secretin receptor activity  
Ontology : EGO-EBIcytoplasmic microtubule  plasma membrane  integral component of plasma membrane  cell surface receptor signaling pathway  G-protein coupled receptor signaling pathway  digestion  excretion  secretin receptor activity  
Pathways : KEGGNeuroactive ligand-receptor interaction    Pancreatic secretion    Bile secretion   
NDEx NetworkSCTR
Atlas of Cancer Signalling NetworkSCTR
Wikipedia pathwaysSCTR
Orthology - Evolution
OrthoDB6344
GeneTree (enSembl)ENSG00000080293
Phylogenetic Trees/Animal Genes : TreeFamSCTR
HOVERGENP47872
HOGENOMP47872
Homologs : HomoloGeneSCTR
Homology/Alignments : Family Browser (UCSC)SCTR
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSCTR [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SCTR
dbVarSCTR
ClinVarSCTR
1000_GenomesSCTR 
Exome Variant ServerSCTR
ExAC (Exome Aggregation Consortium)SCTR (select the gene name)
Genetic variants : HAPMAP6344
Genomic Variants (DGV)SCTR [DGVbeta]
DECIPHERSCTR [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSCTR 
Mutations
ICGC Data PortalSCTR 
TCGA Data PortalSCTR 
Broad Tumor PortalSCTR
OASIS PortalSCTR [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSCTR  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSCTR
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SCTR
DgiDB (Drug Gene Interaction Database)SCTR
DoCM (Curated mutations)SCTR (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SCTR (select a term)
intoGenSCTR
Cancer3DSCTR(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM182098   
Orphanet
MedgenSCTR
Genetic Testing Registry SCTR
NextProtP47872 [Medical]
TSGene6344
GENETestsSCTR
Target ValidationSCTR
Huge Navigator SCTR [HugePedia]
snp3D : Map Gene to Disease6344
BioCentury BCIQSCTR
ClinGenSCTR
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD6344
Chemical/Pharm GKB GenePA35018
Clinical trialSCTR
Miscellaneous
canSAR (ICR)SCTR (select the gene name)
Probes
Litterature
PubMed44 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSCTR
EVEXSCTR
GoPubMedSCTR
iHOPSCTR
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 25 19:30:13 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.