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SCYL2 (SCY1-like 2 (S. cerevisiae))

Identity

Other namesCVAK104
HGNC (Hugo) SCYL2
LocusID (NCBI) 55681
Location 12q23.1
Location_base_pair Starts at 100661549 and ends at 100733914 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)SCYL2   19286
Entrez_Gene (NCBI)SCYL2  55681  SCY1-like 2 (S. cerevisiae)
Cards
GeneCards (Weizmann)SCYL2
Ensembl (Hinxton) [Gene_View]  chr12:100661549-100733914 [Contig_View]  SCYL2 [Vega]
AceView (NCBI)SCYL2
Genatlas (Paris)SCYL2
SOURCE (Stanford)NM_017988
Genomic and cartography
GoldenPath (UCSC)SCYL2  -  12q23.1   chr12:100661549-100733914 +  12q23.1   [Description]    (hg19-Feb_2009)
EnsemblSCYL2 - 12q23.1 [CytoView]
Mapping of homologs : NCBISCYL2 [Mapview]
Gene and transcription
Genbank (Entrez)AB037781 AK000936 AK001597 AK024274 AK026160
RefSeq transcript (SRS)NM_017988
RefSeq transcript (Entrez)NM_017988
RefSeq genomic (SRS)AC_000144 NC_000012 NC_018923 NT_029419 NW_001838061 NW_004078075
RefSeq genomic (Entrez)AC_000144 NC_000012 NC_018923 NT_029419 NW_001838061 NW_004078075
Consensus coding sequences : CCDS (NCBI)SCYL2
Cluster EST : UnigeneHs.506481 [ SRS ] Hs.506481 [ NCBI ]
CGAP (NCI)Hs.506481
Alternative Splicing : Fast-db (Paris)GSHG0006930
Gene ExpressionSCYL2 [ NCBI-GEO ]   SCYL2 [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6P3W7 (SRS) Q6P3W7 (Uniprot)
NextProtQ6P3W7
With graphics : InterProQ6P3W7
Splice isoforms : SwissVarQ6P3W7(Swissvar)
Domaine pattern : Prosite (SRS)HEAT_REPEAT (PS50077)    PROTEIN_KINASE_DOM (PS50011)   
Domaine pattern : Prosite (Expaxy)HEAT_REPEAT (PS50077)    PROTEIN_KINASE_DOM (PS50011)   
Domains : Interpro (SRS)ARM-like    ARM-type_fold    Kinase-like_dom    Prot_kinase_cat_dom   
Domains : Interpro (EBI)ARM-like    ARM-type_fold    Kinase-like_dom    Prot_kinase_cat_dom   
Related proteins : CluSTrQ6P3W7
Domain families : Pfam (SRS)Pkinase (PF00069)   
Domain families : Pfam (Sanger)Pkinase (PF00069)   
Domain families : Pfam (NCBI)pfam00069   
DMDM55681
Blocks (Seattle)Q6P3W7
HPRD07642
IPIIPI00396218   IPI00479300   IPI01020995   IPI01021763   IPI01021909   IPI01021389   
Protein Interaction databases
DIP (DOE-UCLA)Q6P3W7
IntAct (EBI)Q6P3W7
REACTOMESCYL2
Protein Interaction Database55681
BioGRIDSCYL2
InParanoidQ6P3W7
Interologous Interaction database Q6P3W7
IntegromeDBSCYL2
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)SCYL2
SNP (GeneSNP Utah)SCYL2
SNP : HGBaseSCYL2
Genetic variants : HAPMAPSCYL2
Somatic Mutations in Cancer : COSMICSCYL2 
CONAN: Copy Number AnalysisSCYL2 
Mutations and Diseases : HGMDSCYL2
OMIM
GENETests
Disease Genetic AssociationSCYL2
Huge Navigator SCYL2 [HugePedia]  SCYL2 [HugeCancerGEM]
Genomic VariantsSCYL2  SCYL2 [DGVbeta]
ClinVarSCYL2
snp3D : Map Gene to Disease55681
General knowledge
Homologs : HomoloGeneSCYL2
Homology/Alignments : Family Browser (UCSC)SCYL2
Phylogenetic Trees/Animal Genes : TreeFamSCYL2
Chemical/Protein Interactions : CTD55681
Chemical/Pharm GKB GenePA134887807
Clinical trialSCYL2
Ontology : AmiGOpositive regulation of receptor internalization  protein kinase activity  receptor binding  protein binding  ATP binding  Golgi apparatus  endosome to lysosome transport  endosome membrane  clathrin-coated vesicle  perinuclear region of cytoplasm  negative regulation of canonical Wnt receptor signaling pathway  receptor internalization involved in canonical Wnt receptor signaling pathway  positive regulation of clathrin-mediated endocytosis  
Ontology : EGO-EBIpositive regulation of receptor internalization  protein kinase activity  receptor binding  protein binding  ATP binding  Golgi apparatus  endosome to lysosome transport  endosome membrane  clathrin-coated vesicle  perinuclear region of cytoplasm  negative regulation of canonical Wnt receptor signaling pathway  receptor internalization involved in canonical Wnt receptor signaling pathway  positive regulation of clathrin-mediated endocytosis  
Other databases
Probes
Litterature
PubMed19 Pubmed reference(s) in Entrez
PubGeneSCYL2
iHOPSCYL2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri Jun 14 17:53:22 CEST 2013
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