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SCYL3 (SCY1-like 3 (S. cerevisiae))

Identity

Alias_namesSCY1-like 3 (S. cerevisiae)
SCY1-like, kinase-like 3
Alias_symbol (synonym)PACE-1
PACE1
Other alias
HGNC (Hugo) SCYL3
LocusID (NCBI) 57147
Atlas_Id 73061
Location 1q24.2  [Link to chromosome band 1q24]
Location_base_pair Starts at 169822215 and ends at 169863100 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SCYL3   19285
Cards
Entrez_Gene (NCBI)SCYL3  57147  SCY1-like 3 (S. cerevisiae)
AliasesPACE-1; PACE1
GeneCards (Weizmann)SCYL3
Ensembl hg19 (Hinxton)ENSG00000000457 [Gene_View]  chr1:169822215-169863100 [Contig_View]  SCYL3 [Vega]
Ensembl hg38 (Hinxton)ENSG00000000457 [Gene_View]  chr1:169822215-169863100 [Contig_View]  SCYL3 [Vega]
ICGC DataPortalENSG00000000457
TCGA cBioPortalSCYL3
AceView (NCBI)SCYL3
Genatlas (Paris)SCYL3
WikiGenes57147
SOURCE (Princeton)SCYL3
Genetics Home Reference (NIH)SCYL3
Genomic and cartography
GoldenPath hg19 (UCSC)SCYL3  -     chr1:169822215-169863100 -  1q24.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SCYL3  -     1q24.2   [Description]    (hg38-Dec_2013)
EnsemblSCYL3 - 1q24.2 [CytoView hg19]  SCYL3 - 1q24.2 [CytoView hg38]
Mapping of homologs : NCBISCYL3 [Mapview hg19]  SCYL3 [Mapview hg38]
OMIM608192   
Gene and transcription
Genbank (Entrez)AA844031 AF540957 AK292507 AK304481 AL117233
RefSeq transcript (Entrez)NM_020423 NM_181093
RefSeq genomic (Entrez)NC_000001 NC_018912 NT_004487 NW_004929293
Consensus coding sequences : CCDS (NCBI)SCYL3
Cluster EST : UnigeneHs.443551 [ NCBI ]
CGAP (NCI)Hs.443551
Alternative Splicing GalleryENSG00000000457
Gene ExpressionSCYL3 [ NCBI-GEO ]   SCYL3 [ EBI - ARRAY_EXPRESS ]   SCYL3 [ SEEK ]   SCYL3 [ MEM ]
Gene Expression Viewer (FireBrowse)SCYL3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)57147
GTEX Portal (Tissue expression)SCYL3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IZE3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IZE3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IZE3
Splice isoforms : SwissVarQ8IZE3
PhosPhoSitePlusQ8IZE3
Domaine pattern : Prosite (Expaxy)HEAT_REPEAT (PS50077)    PROTEIN_KINASE_DOM (PS50011)   
Domains : Interpro (EBI)ARM-like    ARM-type_fold    HEAT_type_2    Kinase-like_dom    Prot_kinase_dom   
Domain families : Pfam (Sanger)Pkinase (PF00069)   
Domain families : Pfam (NCBI)pfam00069   
Conserved Domain (NCBI)SCYL3
DMDM Disease mutations57147
Blocks (Seattle)SCYL3
SuperfamilyQ8IZE3
Human Protein AtlasENSG00000000457
Peptide AtlasQ8IZE3
HPRD07459
IPIIPI00217989   IPI00237463   IPI00640590   
Protein Interaction databases
DIP (DOE-UCLA)Q8IZE3
IntAct (EBI)Q8IZE3
FunCoupENSG00000000457
BioGRIDSCYL3
STRING (EMBL)SCYL3
ZODIACSCYL3
Ontologies - Pathways
QuickGOQ8IZE3
Ontology : AmiGOprotein binding  ATP binding  cytoplasm  Golgi apparatus  protein phosphorylation  kinase activity  cell migration  lamellipodium  
Ontology : EGO-EBIprotein binding  ATP binding  cytoplasm  Golgi apparatus  protein phosphorylation  kinase activity  cell migration  lamellipodium  
NDEx NetworkSCYL3
Atlas of Cancer Signalling NetworkSCYL3
Wikipedia pathwaysSCYL3
Orthology - Evolution
OrthoDB57147
GeneTree (enSembl)ENSG00000000457
Phylogenetic Trees/Animal Genes : TreeFamSCYL3
HOVERGENQ8IZE3
HOGENOMQ8IZE3
Homologs : HomoloGeneSCYL3
Homology/Alignments : Family Browser (UCSC)SCYL3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSCYL3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SCYL3
dbVarSCYL3
ClinVarSCYL3
1000_GenomesSCYL3 
Exome Variant ServerSCYL3
ExAC (Exome Aggregation Consortium)SCYL3 (select the gene name)
Genetic variants : HAPMAP57147
Genomic Variants (DGV)SCYL3 [DGVbeta]
DECIPHER (Syndromes)1:169822215-169863100  ENSG00000000457
CONAN: Copy Number AnalysisSCYL3 
Mutations
ICGC Data PortalSCYL3 
TCGA Data PortalSCYL3 
Broad Tumor PortalSCYL3
OASIS PortalSCYL3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSCYL3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSCYL3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SCYL3
DgiDB (Drug Gene Interaction Database)SCYL3
DoCM (Curated mutations)SCYL3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SCYL3 (select a term)
intoGenSCYL3
Cancer3DSCYL3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608192   
Orphanet
MedgenSCYL3
Genetic Testing Registry SCYL3
NextProtQ8IZE3 [Medical]
TSGene57147
GENETestsSCYL3
Huge Navigator SCYL3 [HugePedia]
snp3D : Map Gene to Disease57147
BioCentury BCIQSCYL3
ClinGenSCYL3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD57147
Chemical/Pharm GKB GenePA142670945
Clinical trialSCYL3
Miscellaneous
canSAR (ICR)SCYL3 (select the gene name)
Probes
Litterature
PubMed19 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSCYL3
EVEXSCYL3
GoPubMedSCYL3
iHOPSCYL3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:42:35 CET 2017

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