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SDAD1 (SDA1 domain containing 1)

Identity

Alias_symbol (synonym)FLJ10498
Other alias-
HGNC (Hugo) SDAD1
LocusID (NCBI) 55153
Atlas_Id 73062
Location 4q21.1  [Link to chromosome band 4q21]
Location_base_pair Starts at 75949906 and ends at 75990962 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SDAD1   25537
Cards
Entrez_Gene (NCBI)SDAD1  55153  SDA1 domain containing 1
Aliases
GeneCards (Weizmann)SDAD1
Ensembl hg19 (Hinxton)ENSG00000198301 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000198301 [Gene_View]  chr4:75949906-75990962 [Contig_View]  SDAD1 [Vega]
ICGC DataPortalENSG00000198301
TCGA cBioPortalSDAD1
AceView (NCBI)SDAD1
Genatlas (Paris)SDAD1
WikiGenes55153
SOURCE (Princeton)SDAD1
Genetics Home Reference (NIH)SDAD1
Genomic and cartography
GoldenPath hg38 (UCSC)SDAD1  -     chr4:75949906-75990962 -  4q21.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SDAD1  -     4q21.1   [Description]    (hg19-Feb_2009)
EnsemblSDAD1 - 4q21.1 [CytoView hg19]  SDAD1 - 4q21.1 [CytoView hg38]
Mapping of homologs : NCBISDAD1 [Mapview hg19]  SDAD1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF132198 AK001360 AK022683 AK024031 AK300074
RefSeq transcript (Entrez)NM_001288983 NM_001288984 NM_018115
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SDAD1
Cluster EST : UnigeneHs.632604 [ NCBI ]
CGAP (NCI)Hs.632604
Alternative Splicing GalleryENSG00000198301
Gene ExpressionSDAD1 [ NCBI-GEO ]   SDAD1 [ EBI - ARRAY_EXPRESS ]   SDAD1 [ SEEK ]   SDAD1 [ MEM ]
Gene Expression Viewer (FireBrowse)SDAD1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55153
GTEX Portal (Tissue expression)SDAD1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NVU7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NVU7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NVU7
Splice isoforms : SwissVarQ9NVU7
PhosPhoSitePlusQ9NVU7
Domains : Interpro (EBI)ARM-type_fold    Sda1    SDA1_dom    Uncharacterised_NUC130/133_N   
Domain families : Pfam (Sanger)NUC130_3NT (PF08158)    SDA1 (PF05285)   
Domain families : Pfam (NCBI)pfam08158    pfam05285   
Conserved Domain (NCBI)SDAD1
DMDM Disease mutations55153
Blocks (Seattle)SDAD1
SuperfamilyQ9NVU7
Human Protein AtlasENSG00000198301
Peptide AtlasQ9NVU7
HPRD10214
IPIIPI00018240   IPI00797421   IPI00887486   IPI00967658   IPI00910311   IPI00966953   IPI00966637   
Protein Interaction databases
DIP (DOE-UCLA)Q9NVU7
IntAct (EBI)Q9NVU7
FunCoupENSG00000198301
BioGRIDSDAD1
STRING (EMBL)SDAD1
ZODIACSDAD1
Ontologies - Pathways
QuickGOQ9NVU7
Ontology : AmiGOribosomal large subunit export from nucleus  molecular_function  nucleus  nucleolus  actin cytoskeleton organization  ribosomal large subunit biogenesis  
Ontology : EGO-EBIribosomal large subunit export from nucleus  molecular_function  nucleus  nucleolus  actin cytoskeleton organization  ribosomal large subunit biogenesis  
NDEx NetworkSDAD1
Atlas of Cancer Signalling NetworkSDAD1
Wikipedia pathwaysSDAD1
Orthology - Evolution
OrthoDB55153
GeneTree (enSembl)ENSG00000198301
Phylogenetic Trees/Animal Genes : TreeFamSDAD1
HOVERGENQ9NVU7
HOGENOMQ9NVU7
Homologs : HomoloGeneSDAD1
Homology/Alignments : Family Browser (UCSC)SDAD1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSDAD1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SDAD1
dbVarSDAD1
ClinVarSDAD1
1000_GenomesSDAD1 
Exome Variant ServerSDAD1
ExAC (Exome Aggregation Consortium)SDAD1 (select the gene name)
Genetic variants : HAPMAP55153
Genomic Variants (DGV)SDAD1 [DGVbeta]
DECIPHERSDAD1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSDAD1 
Mutations
ICGC Data PortalSDAD1 
TCGA Data PortalSDAD1 
Broad Tumor PortalSDAD1
OASIS PortalSDAD1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSDAD1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSDAD1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SDAD1
DgiDB (Drug Gene Interaction Database)SDAD1
DoCM (Curated mutations)SDAD1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SDAD1 (select a term)
intoGenSDAD1
Cancer3DSDAD1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenSDAD1
Genetic Testing Registry SDAD1
NextProtQ9NVU7 [Medical]
TSGene55153
GENETestsSDAD1
Target ValidationSDAD1
Huge Navigator SDAD1 [HugePedia]
snp3D : Map Gene to Disease55153
BioCentury BCIQSDAD1
ClinGenSDAD1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55153
Chemical/Pharm GKB GenePA134961441
Clinical trialSDAD1
Miscellaneous
canSAR (ICR)SDAD1 (select the gene name)
Probes
Litterature
PubMed23 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSDAD1
EVEXSDAD1
GoPubMedSDAD1
iHOPSDAD1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:37:23 CEST 2017

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