Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

SDAD1 (SDA1 domain containing 1)

Identity

Alias (NCBI)-
HGNC (Hugo) SDAD1
HGNC Alias symbFLJ10498
LocusID (NCBI) 55153
Atlas_Id 57191
Location 4q21.1  [Link to chromosome band 4q21]
Location_base_pair Starts at 75949915 and ends at 75990945 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)SDAD1   25537
Cards
Entrez_Gene (NCBI)SDAD1    SDA1 domain containing 1
Aliases
GeneCards (Weizmann)SDAD1
Ensembl hg19 (Hinxton)ENSG00000198301 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000198301 [Gene_View]  ENSG00000198301 [Sequence]  chr4:75949915-75990945 [Contig_View]  SDAD1 [Vega]
ICGC DataPortalENSG00000198301
TCGA cBioPortalSDAD1
AceView (NCBI)SDAD1
Genatlas (Paris)SDAD1
SOURCE (Princeton)SDAD1
Genetics Home Reference (NIH)SDAD1
Genomic and cartography
GoldenPath hg38 (UCSC)SDAD1  -     chr4:75949915-75990945 -  4q21.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SDAD1  -     4q21.1   [Description]    (hg19-Feb_2009)
GoldenPathSDAD1 - 4q21.1 [CytoView hg19]  SDAD1 - 4q21.1 [CytoView hg38]
ImmunoBaseENSG00000198301
Genome Data Viewer NCBISDAD1 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AF132198 AK001360 AK022683 AK024031 AK300074
RefSeq transcript (Entrez)NM_001288983 NM_001288984 NM_018115
Consensus coding sequences : CCDS (NCBI)SDAD1
Gene ExpressionSDAD1 [ NCBI-GEO ]   SDAD1 [ EBI - ARRAY_EXPRESS ]   SDAD1 [ SEEK ]   SDAD1 [ MEM ]
Gene Expression Viewer (FireBrowse)SDAD1 [ Firebrowse - Broad ]
GenevisibleExpression of SDAD1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55153
GTEX Portal (Tissue expression)SDAD1
Human Protein AtlasENSG00000198301-SDAD1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NVU7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NVU7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NVU7
PhosPhoSitePlusQ9NVU7
Domains : Interpro (EBI)ARM-type_fold    Sda1    SDA1_dom    Uncharacterised_NUC130/133_N   
Domain families : Pfam (Sanger)NUC130_3NT (PF08158)    SDA1 (PF05285)   
Domain families : Pfam (NCBI)pfam08158    pfam05285   
Conserved Domain (NCBI)SDAD1
SuperfamilyQ9NVU7
AlphaFold pdb e-kbQ9NVU7   
Human Protein Atlas [tissue]ENSG00000198301-SDAD1 [tissue]
Protein Interaction databases
DIP (DOE-UCLA)Q9NVU7
IntAct (EBI)Q9NVU7
BioGRIDSDAD1
STRING (EMBL)SDAD1
ZODIACSDAD1
Ontologies - Pathways
QuickGOQ9NVU7
Ontology : AmiGOribosomal large subunit export from nucleus  molecular_function  nucleoplasm  nucleolus  nucleolus  protein transport  actin cytoskeleton organization  ribosomal large subunit biogenesis  ribosomal large subunit biogenesis  
Ontology : EGO-EBIribosomal large subunit export from nucleus  molecular_function  nucleoplasm  nucleolus  nucleolus  protein transport  actin cytoskeleton organization  ribosomal large subunit biogenesis  ribosomal large subunit biogenesis  
NDEx NetworkSDAD1
Atlas of Cancer Signalling NetworkSDAD1
Wikipedia pathwaysSDAD1
Orthology - Evolution
OrthoDB55153
GeneTree (enSembl)ENSG00000198301
Phylogenetic Trees/Animal Genes : TreeFamSDAD1
Homologs : HomoloGeneSDAD1
Homology/Alignments : Family Browser (UCSC)SDAD1
Gene fusions - Rearrangements
Fusion : QuiverSDAD1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSDAD1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SDAD1
dbVarSDAD1
ClinVarSDAD1
MonarchSDAD1
1000_GenomesSDAD1 
Exome Variant ServerSDAD1
GNOMAD BrowserENSG00000198301
Varsome BrowserSDAD1
ACMGSDAD1 variants
VarityQ9NVU7
Genomic Variants (DGV)SDAD1 [DGVbeta]
DECIPHERSDAD1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSDAD1 
Mutations
ICGC Data PortalSDAD1 
TCGA Data PortalSDAD1 
Broad Tumor PortalSDAD1
OASIS PortalSDAD1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSDAD1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DSDAD1
Mutations and Diseases : HGMDSDAD1
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaSDAD1
DgiDB (Drug Gene Interaction Database)SDAD1
DoCM (Curated mutations)SDAD1
CIViC (Clinical Interpretations of Variants in Cancer)SDAD1
Cancer3DSDAD1
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETSDAD1
MedgenSDAD1
Genetic Testing Registry SDAD1
NextProtQ9NVU7 [Medical]
GENETestsSDAD1
Target ValidationSDAD1
Huge Navigator SDAD1 [HugePedia]
ClinGenSDAD1
Clinical trials, drugs, therapy
MyCancerGenomeSDAD1
Protein Interactions : CTDSDAD1
Pharm GKB GenePA134961441
PharosQ9NVU7
Clinical trialSDAD1
Miscellaneous
canSAR (ICR)SDAD1
HarmonizomeSDAD1
DataMed IndexSDAD1
Probes
Litterature
PubMed52 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXSDAD1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Oct 4 15:30:20 CEST 2021

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.