Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

SDCBP2-AS1 (SDCBP2 antisense RNA 1)

Identity

Alias_namesSDCBP2 antisense RNA 1 (non-protein coding)
Other alias-
HGNC (Hugo) SDCBP2-AS1
LocusID (NCBI) 100507495
Atlas_Id 73065
Location 20p13  [Link to chromosome band 20p13]
Location_base_pair Starts at 1305987 and ends at 1359379 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SDCBP2-AS1   44314
Cards
Entrez_Gene (NCBI)SDCBP2-AS1  100507495  SDCBP2 antisense RNA 1
Aliases
GeneCards (Weizmann)SDCBP2-AS1
Ensembl hg19 (Hinxton)ENSG00000234684 [Gene_View]  chr20:1305987-1359379 [Contig_View]  SDCBP2-AS1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000234684 [Gene_View]  chr20:1305987-1359379 [Contig_View]  SDCBP2-AS1 [Vega]
ICGC DataPortalENSG00000234684
TCGA cBioPortalSDCBP2-AS1
AceView (NCBI)SDCBP2-AS1
Genatlas (Paris)SDCBP2-AS1
WikiGenes100507495
SOURCE (Princeton)SDCBP2-AS1
Genetics Home Reference (NIH)SDCBP2-AS1
Genomic and cartography
GoldenPath hg19 (UCSC)SDCBP2-AS1  -     chr20:1305987-1359379 +  20p13   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SDCBP2-AS1  -     20p13   [Description]    (hg38-Dec_2013)
EnsemblSDCBP2-AS1 - 20p13 [CytoView hg19]  SDCBP2-AS1 - 20p13 [CytoView hg38]
Mapping of homologs : NCBISDCBP2-AS1 [Mapview hg19]  SDCBP2-AS1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK055993 BC034773 DA094549 DA274215 DB454162
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)NC_000020 NC_018931 NT_011387 NW_004929416
Consensus coding sequences : CCDS (NCBI)SDCBP2-AS1
Cluster EST : UnigeneHs.655785 [ NCBI ]
CGAP (NCI)Hs.655785
Alternative Splicing GalleryENSG00000234684
Gene ExpressionSDCBP2-AS1 [ NCBI-GEO ]   SDCBP2-AS1 [ EBI - ARRAY_EXPRESS ]   SDCBP2-AS1 [ SEEK ]   SDCBP2-AS1 [ MEM ]
Gene Expression Viewer (FireBrowse)SDCBP2-AS1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100507495
GTEX Portal (Tissue expression)SDCBP2-AS1
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SDCBP2-AS1
DMDM Disease mutations100507495
Blocks (Seattle)SDCBP2-AS1
Human Protein AtlasENSG00000234684
Protein Interaction databases
FunCoupENSG00000234684
BioGRIDSDCBP2-AS1
STRING (EMBL)SDCBP2-AS1
ZODIACSDCBP2-AS1
Ontologies - Pathways
Huge Navigator SDCBP2-AS1 [HugePedia]
snp3D : Map Gene to Disease100507495
BioCentury BCIQSDCBP2-AS1
ClinGenSDCBP2-AS1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100507495
Clinical trialSDCBP2-AS1
Miscellaneous
canSAR (ICR)SDCBP2-AS1 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSDCBP2-AS1
EVEXSDCBP2-AS1
GoPubMedSDCBP2-AS1
iHOPSDCBP2-AS1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:42:36 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.