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SDCCAG3 (serologically defined colon cancer antigen 3)

Identity

Alias_symbol (synonym)NY-CO-3
Other alias
HGNC (Hugo) SDCCAG3
LocusID (NCBI) 10807
Atlas_Id 42230
Location 9q34.3  [Link to chromosome band 9q34]
Location_base_pair Starts at 136401922 and ends at 136410602 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ARAP1 (11q13.4) / SDCCAG3 (9q34.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SDCCAG3   10667
Cards
Entrez_Gene (NCBI)SDCCAG3  10807  serologically defined colon cancer antigen 3
AliasesNY-CO-3
GeneCards (Weizmann)SDCCAG3
Ensembl hg19 (Hinxton)ENSG00000165689 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000165689 [Gene_View]  chr9:136401922-136410602 [Contig_View]  SDCCAG3 [Vega]
ICGC DataPortalENSG00000165689
TCGA cBioPortalSDCCAG3
AceView (NCBI)SDCCAG3
Genatlas (Paris)SDCCAG3
WikiGenes10807
SOURCE (Princeton)SDCCAG3
Genetics Home Reference (NIH)SDCCAG3
Genomic and cartography
GoldenPath hg38 (UCSC)SDCCAG3  -     chr9:136401922-136410602 -  9q34.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SDCCAG3  -     9q34.3   [Description]    (hg19-Feb_2009)
EnsemblSDCCAG3 - 9q34.3 [CytoView hg19]  SDCCAG3 - 9q34.3 [CytoView hg38]
Mapping of homologs : NCBISDCCAG3 [Mapview hg19]  SDCCAG3 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA742964 AF039688 AK001296 AL559847 AY129014
RefSeq transcript (Entrez)NM_001039707 NM_001039708 NM_006643
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SDCCAG3
Cluster EST : UnigeneHs.94300 [ NCBI ]
CGAP (NCI)Hs.94300
Alternative Splicing GalleryENSG00000165689
Gene ExpressionSDCCAG3 [ NCBI-GEO ]   SDCCAG3 [ EBI - ARRAY_EXPRESS ]   SDCCAG3 [ SEEK ]   SDCCAG3 [ MEM ]
Gene Expression Viewer (FireBrowse)SDCCAG3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10807
GTEX Portal (Tissue expression)SDCCAG3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96C92   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96C92  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96C92
Splice isoforms : SwissVarQ96C92
PhosPhoSitePlusQ96C92
Domains : Interpro (EBI)SDCCAG3   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SDCCAG3
DMDM Disease mutations10807
Blocks (Seattle)SDCCAG3
SuperfamilyQ96C92
Human Protein AtlasENSG00000165689
Peptide AtlasQ96C92
HPRD15307
IPIIPI00432355   IPI00093725   IPI00888891   IPI00514920   IPI00433461   IPI00514081   IPI00514356   IPI00646391   
Protein Interaction databases
DIP (DOE-UCLA)Q96C92
IntAct (EBI)Q96C92
FunCoupENSG00000165689
BioGRIDSDCCAG3
STRING (EMBL)SDCCAG3
ZODIACSDCCAG3
Ontologies - Pathways
QuickGOQ96C92
Ontology : AmiGOprotein binding  endosome  early endosome  cell cycle  protein transport  midbody  retromer complex  regulation of cytokinesis  cell division  recycling endosome  retrograde transport, endosome to plasma membrane  
Ontology : EGO-EBIprotein binding  endosome  early endosome  cell cycle  protein transport  midbody  retromer complex  regulation of cytokinesis  cell division  recycling endosome  retrograde transport, endosome to plasma membrane  
NDEx NetworkSDCCAG3
Atlas of Cancer Signalling NetworkSDCCAG3
Wikipedia pathwaysSDCCAG3
Orthology - Evolution
OrthoDB10807
GeneTree (enSembl)ENSG00000165689
Phylogenetic Trees/Animal Genes : TreeFamSDCCAG3
HOVERGENQ96C92
HOGENOMQ96C92
Homologs : HomoloGeneSDCCAG3
Homology/Alignments : Family Browser (UCSC)SDCCAG3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSDCCAG3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SDCCAG3
dbVarSDCCAG3
ClinVarSDCCAG3
1000_GenomesSDCCAG3 
Exome Variant ServerSDCCAG3
ExAC (Exome Aggregation Consortium)SDCCAG3 (select the gene name)
Genetic variants : HAPMAP10807
Genomic Variants (DGV)SDCCAG3 [DGVbeta]
DECIPHERSDCCAG3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSDCCAG3 
Mutations
ICGC Data PortalSDCCAG3 
TCGA Data PortalSDCCAG3 
Broad Tumor PortalSDCCAG3
OASIS PortalSDCCAG3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSDCCAG3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSDCCAG3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SDCCAG3
DgiDB (Drug Gene Interaction Database)SDCCAG3
DoCM (Curated mutations)SDCCAG3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SDCCAG3 (select a term)
intoGenSDCCAG3
Cancer3DSDCCAG3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenSDCCAG3
Genetic Testing Registry SDCCAG3
NextProtQ96C92 [Medical]
TSGene10807
GENETestsSDCCAG3
Huge Navigator SDCCAG3 [HugePedia]
snp3D : Map Gene to Disease10807
BioCentury BCIQSDCCAG3
ClinGenSDCCAG3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD10807
Chemical/Pharm GKB GenePA35597
Clinical trialSDCCAG3
Miscellaneous
canSAR (ICR)SDCCAG3 (select the gene name)
Probes
Litterature
PubMed28 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSDCCAG3
EVEXSDCCAG3
GoPubMedSDCCAG3
iHOPSDCCAG3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:36:23 CEST 2017

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