Atlas of Genetics and Cytogenetics in Oncology and Haematology


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SDCCAG8 (serologically defined colon cancer antigen 8)

Identity

Other namesBBS16
CCCAP
CCCAP SLSN7
NPHP10
NY-CO-8
SLSN7
hCCCAP
HGNC (Hugo) SDCCAG8
LocusID (NCBI) 10806
Location 1q43
Location_base_pair Starts at 243419307 and ends at 243663393 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)SDCCAG8   10671
Cards
Entrez_Gene (NCBI)SDCCAG8  10806  serologically defined colon cancer antigen 8
GeneCards (Weizmann)SDCCAG8
Ensembl (Hinxton)ENSG00000054282 [Gene_View]  chr1:243419307-243663393 [Contig_View]  SDCCAG8 [Vega]
ICGC DataPortalENSG00000054282
cBioPortalSDCCAG8
AceView (NCBI)SDCCAG8
Genatlas (Paris)SDCCAG8
WikiGenes10806
SOURCE (Princeton)NM_006642
Genomic and cartography
GoldenPath (UCSC)SDCCAG8  -  1q43   chr1:243419307-243663393 +  1q43   [Description]    (hg19-Feb_2009)
EnsemblSDCCAG8 - 1q43 [CytoView]
Mapping of homologs : NCBISDCCAG8 [Mapview]
OMIM209900   613524   613615   
Gene and transcription
Genbank (Entrez)AF039690 AF161348 AF250731 AK023586 AK297105
RefSeq transcript (Entrez)NM_006642
RefSeq genomic (Entrez)AC_000133 NC_000001 NC_018912 NG_027811 NT_167186 NT_187519 NW_001838553 NW_004929294
Consensus coding sequences : CCDS (NCBI)SDCCAG8
Cluster EST : UnigeneHs.591530 [ NCBI ]
CGAP (NCI)Hs.591530
Alternative Splicing : Fast-db (Paris)GSHG0001585
Alternative Splicing GalleryENSG00000054282
Gene ExpressionSDCCAG8 [ NCBI-GEO ]     SDCCAG8 [ SEEK ]   SDCCAG8 [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86SQ7 (Uniprot)
NextProtQ86SQ7  [Medical]
With graphics : InterProQ86SQ7
Splice isoforms : SwissVarQ86SQ7 (Swissvar)
Related proteins : CluSTrQ86SQ7
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
DMDM Disease mutations10806
Blocks (Seattle)Q86SQ7
Human Protein AtlasENSG00000054282 [gene] [tissue] [antibody] [cell] [cancer]
Peptide AtlasQ86SQ7
HPRD10215
IPIIPI00873338   IPI00186006   IPI00334336   IPI00854656   IPI00657884   
Protein Interaction databases
DIP (DOE-UCLA)Q86SQ7
IntAct (EBI)Q86SQ7
FunCoupENSG00000054282
BioGRIDSDCCAG8
InParanoidQ86SQ7
Interologous Interaction database Q86SQ7
IntegromeDBSDCCAG8
STRING (EMBL)SDCCAG8
Ontologies - Pathways
Ontology : AmiGOG2/M transition of mitotic cell cycle  mitotic cell cycle  protein binding  centrosome  centriole  cytosol  cell-cell junction  establishment of cell polarity  tube formation  
Ontology : EGO-EBIG2/M transition of mitotic cell cycle  mitotic cell cycle  protein binding  centrosome  centriole  cytosol  cell-cell junction  establishment of cell polarity  tube formation  
Protein Interaction DatabaseSDCCAG8
Wikipedia pathwaysSDCCAG8
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)SDCCAG8
snp3D : Map Gene to Disease10806
SNP (GeneSNP Utah)SDCCAG8
SNP : HGBaseSDCCAG8
Genetic variants : HAPMAPSDCCAG8
Exome VariantSDCCAG8
1000_GenomesSDCCAG8 
ICGC programENSG00000054282 
Somatic Mutations in Cancer : COSMICSDCCAG8 
CONAN: Copy Number AnalysisSDCCAG8 
Mutations and Diseases : HGMDSDCCAG8
Mutations and Diseases : intOGenSDCCAG8
Genomic VariantsSDCCAG8  SDCCAG8 [DGVbeta]
dbVarSDCCAG8
ClinVarSDCCAG8
Pred. of missensesPolyPhen-2  SIFT(SG)  SIFT(JCVI)  Align-GVGD  MutAssessor  Mutanalyser  
Pred. splicesGeneSplicer  Human Splicing Finder  MaxEntScan  
Diseases
OMIM209900    613524    613615   
MedgenSDCCAG8
GENETestsSDCCAG8
Disease Genetic AssociationSDCCAG8
Huge Navigator SDCCAG8 [HugePedia]  SDCCAG8 [HugeCancerGEM]
General knowledge
Homologs : HomoloGeneSDCCAG8
Homology/Alignments : Family Browser (UCSC)SDCCAG8
Phylogenetic Trees/Animal Genes : TreeFamSDCCAG8
Chemical/Protein Interactions : CTD10806
Chemical/Pharm GKB GenePA35601
Clinical trialSDCCAG8
Cancer Resource (Charite)ENSG00000054282
Other databases
Probes
Litterature
PubMed25 Pubmed reference(s) in Entrez
CoreMineSDCCAG8
iHOPSDCCAG8
OncoSearchSDCCAG8
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Aug 26 17:04:04 CEST 2014

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