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SDCCAG8 (SHH signaling and ciliogenesis regulator SDCCAG8)

Identity

Alias (NCBI)BBS16
CCCAP
CCCAP SLSN7
HSPC085
NPHP10
NY-CO-8
SLSN7
hCCCAP
HGNC (Hugo) SDCCAG8
HGNC Alias symbNY-CO-8
CCCAP
SLSN7
NPHP10
BBS16
HGNC Alias namecentrosomal colon cancer autoantigen protein
 Bardet-Biedl syndrome 16
 nephrocystin 10
 Senior-Loken syndrome 7
HGNC Previous nameserologically defined colon cancer antigen 8
LocusID (NCBI) 10806
Atlas_Id 42232
Location 1q43  [Link to chromosome band 1q43]
Location_base_pair Starts at 243256041 and ends at 243500091 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CCDC14 (3q21.1) / SDCCAG8 (1q43)CEP170 (1q43) / SDCCAG8 (1q43)COX20 (1q44) / SDCCAG8 (1q43)
EFCAB2 (1q44) / SDCCAG8 (1q43)RPL23AP53 (8p23.3) / SDCCAG8 (1q43)RPS6KC1 (1q32.3) / SDCCAG8 (1q43)
SDCCAG8 (1q43) / C1orf101 (1q44)SDCCAG8 (1q43) / CEP170 (1q43)SDCCAG8 (1q43) / DNAJC5 (20q13.33)
SDCCAG8 (1q43) / SDCCAG8 (1q43)TCAF1 (7q35) / SDCCAG8 (1q43)CEP170 1q43 / SDCCAG8 1q43
EFCAB2 1q44 / SDCCAG8 1q43FAM36A SDCCAG8 1q43RPS6KC1 1q32.3 / SDCCAG8 1q43
SDCCAG8 1q43 / C1orf101 1q44SDCCAG8 1q43 / CEP170 1q43

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)SDCCAG8   10671
Cards
Entrez_Gene (NCBI)SDCCAG8    SHH signaling and ciliogenesis regulator SDCCAG8
AliasesBBS16; CCCAP; CCCAP; HSPC085; 
NPHP10; NY-CO-8; SLSN7; hCCCAP
GeneCards (Weizmann)SDCCAG8
Ensembl hg19 (Hinxton)ENSG00000054282 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000054282 [Gene_View]  ENSG00000054282 [Sequence]  chr1:243256041-243500091 [Contig_View]  SDCCAG8 [Vega]
ICGC DataPortalENSG00000054282
TCGA cBioPortalSDCCAG8
AceView (NCBI)SDCCAG8
Genatlas (Paris)SDCCAG8
SOURCE (Princeton)SDCCAG8
Genetics Home Reference (NIH)SDCCAG8
Genomic and cartography
GoldenPath hg38 (UCSC)SDCCAG8  -     chr1:243256041-243500091 +  1q43   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SDCCAG8  -     1q43   [Description]    (hg19-Feb_2009)
GoldenPathSDCCAG8 - 1q43 [CytoView hg19]  SDCCAG8 - 1q43 [CytoView hg38]
ImmunoBaseENSG00000054282
Genome Data Viewer NCBISDCCAG8 [Mapview hg19]  
OMIM613524   613615   615993   
Gene and transcription
Genbank (Entrez)AF039690 AF161348 AF250731 AK023586 AK024613
RefSeq transcript (Entrez)NM_001350246 NM_001350247 NM_001350248 NM_001350249 NM_001350251 NM_006642
Consensus coding sequences : CCDS (NCBI)SDCCAG8
Gene ExpressionSDCCAG8 [ NCBI-GEO ]   SDCCAG8 [ EBI - ARRAY_EXPRESS ]   SDCCAG8 [ SEEK ]   SDCCAG8 [ MEM ]
Gene Expression Viewer (FireBrowse)SDCCAG8 [ Firebrowse - Broad ]
GenevisibleExpression of SDCCAG8 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10806
GTEX Portal (Tissue expression)SDCCAG8
Human Protein AtlasENSG00000054282-SDCCAG8 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86SQ7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ86SQ7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ86SQ7
PhosPhoSitePlusQ86SQ7
Domains : Interpro (EBI)SDCCAG8   
Domain families : Pfam (Sanger)CCCAP (PF15964)   
Domain families : Pfam (NCBI)pfam15964   
Conserved Domain (NCBI)SDCCAG8
SuperfamilyQ86SQ7
AlphaFold pdb e-kbQ86SQ7   
Human Protein Atlas [tissue]ENSG00000054282-SDCCAG8 [tissue]
HPRD10215
Protein Interaction databases
DIP (DOE-UCLA)Q86SQ7
IntAct (EBI)Q86SQ7
BioGRIDSDCCAG8
STRING (EMBL)SDCCAG8
ZODIACSDCCAG8
Ontologies - Pathways
QuickGOQ86SQ7
Ontology : AmiGOG2/M transition of mitotic cell cycle  neuron migration  protein binding  centrosome  centrosome  centriole  centriole  cytosol  cell-cell junction  centrosome cycle  regulation of G2/M transition of mitotic cell cycle  establishment of cell polarity  establishment of cell polarity  microtubule organizing center organization  centriolar satellite  tube formation  tube formation  ciliary basal body  ciliary basal body-plasma membrane docking  photoreceptor cell cilium  regulation of cilium assembly  
Ontology : EGO-EBIG2/M transition of mitotic cell cycle  neuron migration  protein binding  centrosome  centrosome  centriole  centriole  cytosol  cell-cell junction  centrosome cycle  regulation of G2/M transition of mitotic cell cycle  establishment of cell polarity  establishment of cell polarity  microtubule organizing center organization  centriolar satellite  tube formation  tube formation  ciliary basal body  ciliary basal body-plasma membrane docking  photoreceptor cell cilium  regulation of cilium assembly  
NDEx NetworkSDCCAG8
Atlas of Cancer Signalling NetworkSDCCAG8
Wikipedia pathwaysSDCCAG8
Orthology - Evolution
OrthoDB10806
GeneTree (enSembl)ENSG00000054282
Phylogenetic Trees/Animal Genes : TreeFamSDCCAG8
Homologs : HomoloGeneSDCCAG8
Homology/Alignments : Family Browser (UCSC)SDCCAG8
Gene fusions - Rearrangements
Fusion : MitelmanRPS6KC1/SDCCAG8 [1q32.3/1q43]  
Fusion : QuiverSDCCAG8
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSDCCAG8 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SDCCAG8
dbVarSDCCAG8
ClinVarSDCCAG8
MonarchSDCCAG8
1000_GenomesSDCCAG8 
Exome Variant ServerSDCCAG8
GNOMAD BrowserENSG00000054282
Varsome BrowserSDCCAG8
ACMGSDCCAG8 variants
VarityQ86SQ7
Genomic Variants (DGV)SDCCAG8 [DGVbeta]
DECIPHERSDCCAG8 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSDCCAG8 
Mutations
ICGC Data PortalSDCCAG8 
TCGA Data PortalSDCCAG8 
Broad Tumor PortalSDCCAG8
OASIS PortalSDCCAG8 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSDCCAG8  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DSDCCAG8
Mutations and Diseases : HGMDSDCCAG8
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaSDCCAG8
DgiDB (Drug Gene Interaction Database)SDCCAG8
DoCM (Curated mutations)SDCCAG8
CIViC (Clinical Interpretations of Variants in Cancer)SDCCAG8
Cancer3DSDCCAG8
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM613524    613615    615993   
Orphanet2824    3244   
DisGeNETSDCCAG8
MedgenSDCCAG8
Genetic Testing Registry SDCCAG8
NextProtQ86SQ7 [Medical]
GENETestsSDCCAG8
Target ValidationSDCCAG8
Huge Navigator SDCCAG8 [HugePedia]
ClinGenSDCCAG8
Clinical trials, drugs, therapy
MyCancerGenomeSDCCAG8
Protein Interactions : CTDSDCCAG8
Pharm GKB GenePA35601
PharosQ86SQ7
Clinical trialSDCCAG8
Miscellaneous
canSAR (ICR)SDCCAG8
HarmonizomeSDCCAG8
DataMed IndexSDCCAG8
Probes
Litterature
PubMed49 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXSDCCAG8
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:30:21 CEST 2021

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