Atlas of Genetics and Cytogenetics in Oncology and Haematology


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SDCCAG8 (serologically defined colon cancer antigen 8)

Identity

Other namesBBS16
CCCAP
CCCAP
HSPC085
NPHP10
NY-CO-8
SLSN7
hCCCAP
HGNC (Hugo) SDCCAG8
LocusID (NCBI) 10806
Atlas_Id 42232
Location 1q43
Location_base_pair Starts at 243419307 and ends at 243663393 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
CCDC14 (3q21.1) / SDCCAG8 (1q43)CEP170 (1q43) / SDCCAG8 (1q43)COX20 (1q44) / SDCCAG8 (1q43)
EFCAB2 (1q44) / SDCCAG8 (1q43)RPL23AP53 (8p23.3) / SDCCAG8 (1q43)RPS6KC1 (1q32.3) / SDCCAG8 (1q43)
SDCCAG8 (1q43) / C1orf101 (1q44)SDCCAG8 (1q43) / CEP170 (1q43)SDCCAG8 (1q43) / DNAJC5 (20q13.33)
SDCCAG8 (1q43) / SDCCAG8 (1q43)TCAF1 (7q35) / SDCCAG8 (1q43)CEP170 1q43 / SDCCAG8 1q43
EFCAB2 1q44 / SDCCAG8 1q43FAM36A SDCCAG8 1q43RPS6KC1 1q32.3 / SDCCAG8 1q43
SDCCAG8 1q43 / C1orf101 1q44SDCCAG8 1q43 / CEP170 1q43

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SDCCAG8   10671
Cards
Entrez_Gene (NCBI)SDCCAG8  10806  serologically defined colon cancer antigen 8
GeneCards (Weizmann)SDCCAG8
Ensembl hg19 (Hinxton)ENSG00000054282 [Gene_View]  chr1:243419307-243663393 [Contig_View]  SDCCAG8 [Vega]
Ensembl hg38 (Hinxton)ENSG00000054282 [Gene_View]  chr1:243419307-243663393 [Contig_View]  SDCCAG8 [Vega]
ICGC DataPortalENSG00000054282
TCGA cBioPortalSDCCAG8
AceView (NCBI)SDCCAG8
Genatlas (Paris)SDCCAG8
WikiGenes10806
SOURCE (Princeton)SDCCAG8
Genomic and cartography
GoldenPath hg19 (UCSC)SDCCAG8  -     chr1:243419307-243663393 +  1q43   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SDCCAG8  -     1q43   [Description]    (hg38-Dec_2013)
EnsemblSDCCAG8 - 1q43 [CytoView hg19]  SDCCAG8 - 1q43 [CytoView hg38]
Mapping of homologs : NCBISDCCAG8 [Mapview hg19]  SDCCAG8 [Mapview hg38]
OMIM209900   613524   613615   615993   
Gene and transcription
Genbank (Entrez)AF039690 AF161348 AF250731 AK023586 AK297105
RefSeq transcript (Entrez)NM_006642
RefSeq genomic (Entrez)NC_000001 NC_018912 NG_027811 NT_167186 NT_187519 NW_004929294
Consensus coding sequences : CCDS (NCBI)SDCCAG8
Cluster EST : UnigeneHs.591530 [ NCBI ]
CGAP (NCI)Hs.591530
Alternative Splicing : Fast-db (Paris)GSHG0001585
Alternative Splicing GalleryENSG00000054282
Gene ExpressionSDCCAG8 [ NCBI-GEO ]   SDCCAG8 [ EBI - ARRAY_EXPRESS ]   SDCCAG8 [ SEEK ]   SDCCAG8 [ MEM ]
Gene Expression Viewer (FireBrowse)SDCCAG8 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)10806
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86SQ7 (Uniprot)
NextProtQ86SQ7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ86SQ7
Splice isoforms : SwissVarQ86SQ7 (Swissvar)
PhosPhoSitePlusQ86SQ7
Domains : Interpro (EBI)SDCCAG8   
Domain families : Pfam (Sanger)CCCAP (PF15964)   
Domain families : Pfam (NCBI)pfam15964   
DMDM Disease mutations10806
Blocks (Seattle)SDCCAG8
SuperfamilyQ86SQ7
Human Protein AtlasENSG00000054282
Peptide AtlasQ86SQ7
HPRD10215
IPIIPI00873338   IPI00186006   IPI00334336   IPI00854656   IPI00657884   
Protein Interaction databases
DIP (DOE-UCLA)Q86SQ7
IntAct (EBI)Q86SQ7
FunCoupENSG00000054282
BioGRIDSDCCAG8
STRING (EMBL)SDCCAG8
ZODIACSDCCAG8
Ontologies - Pathways
QuickGOQ86SQ7
Ontology : AmiGOG2/M transition of mitotic cell cycle  neuron migration  protein binding  centrosome  centriole  cytosol  cell-cell junction  establishment of cell polarity  centriolar satellite  tube formation  centrosome organization  
Ontology : EGO-EBIG2/M transition of mitotic cell cycle  neuron migration  protein binding  centrosome  centriole  cytosol  cell-cell junction  establishment of cell polarity  centriolar satellite  tube formation  centrosome organization  
NDEx Network
Atlas of Cancer Signalling NetworkSDCCAG8
Wikipedia pathwaysSDCCAG8
Orthology - Evolution
OrthoDB10806
GeneTree (enSembl)ENSG00000054282
Phylogenetic Trees/Animal Genes : TreeFamSDCCAG8
Homologs : HomoloGeneSDCCAG8
Homology/Alignments : Family Browser (UCSC)SDCCAG8
Gene fusions - Rearrangements
Fusion: TCGACEP170 1q43 SDCCAG8 1q43 LUAD
Fusion: TCGAEFCAB2 1q44 SDCCAG8 1q43 LUAD
Fusion: TCGAFAM36A SDCCAG8 1q43 BRCA
Fusion: TCGARPS6KC1 1q32.3 SDCCAG8 1q43 LUAD
Fusion: TCGASDCCAG8 1q43 C1orf101 1q44 BRCA
Fusion: TCGASDCCAG8 1q43 CEP170 1q43 HNSC
Polymorphisms : SNP, variants
NCBI Variation ViewerSDCCAG8 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SDCCAG8
dbVarSDCCAG8
ClinVarSDCCAG8
1000_GenomesSDCCAG8 
Exome Variant ServerSDCCAG8
ExAC (Exome Aggregation Consortium)SDCCAG8 (select the gene name)
SNP (GeneSNP Utah)SDCCAG8
SNP : HGBaseSDCCAG8
Genetic variants : HAPMAPSDCCAG8
Genomic Variants (DGV)SDCCAG8 [DGVbeta]
Mutations
ICGC Data PortalSDCCAG8 
TCGA Data PortalSDCCAG8 
Broad Tumor PortalSDCCAG8
OASIS PortalSDCCAG8 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSDCCAG8 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)Eye diseases - LOVD
LOVD (Leiden Open Variation Database)EURO-WABB PROJECT OPEN VARIATION DATABASE
BioMutasearch SDCCAG8
DgiDB (Drug Gene Interaction Database)SDCCAG8
DoCM (Curated mutations)SDCCAG8 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SDCCAG8 (select a term)
intoGenSDCCAG8
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)1:243419307-243663393
CONAN: Copy Number AnalysisSDCCAG8 
Mutations and Diseases : HGMDSDCCAG8
OMIM209900    613524    613615    615993   
MedgenSDCCAG8
Genetic Testing Registry SDCCAG8
NextProtQ86SQ7 [Medical]
TSGene10806
GENETestsSDCCAG8
Huge Navigator SDCCAG8 [HugePedia]  SDCCAG8 [HugeCancerGEM]
snp3D : Map Gene to Disease10806
BioCentury BCIQSDCCAG8
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD10806
Chemical/Pharm GKB GenePA35601
Clinical trialSDCCAG8
Miscellaneous
canSAR (ICR)SDCCAG8 (select the gene name)
Probes
Litterature
PubMed35 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSDCCAG8
GoPubMedSDCCAG8
iHOPSDCCAG8
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Apr 16 18:03:27 CEST 2016

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