Atlas of Genetics and Cytogenetics in Oncology and Haematology


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SDCCAG8 (serologically defined colon cancer antigen 8)

Identity

Other namesBBS16
CCCAP
CCCAP SLSN7
NPHP10
NY-CO-8
SLSN7
hCCCAP
HGNC (Hugo) SDCCAG8
LocusID (NCBI) 10806
Location 1q43
Location_base_pair Starts at 243419307 and ends at 243663393 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)SDCCAG8   10671
Cards
Entrez_Gene (NCBI)SDCCAG8  10806  serologically defined colon cancer antigen 8
GeneCards (Weizmann)SDCCAG8
Ensembl hg19 (Hinxton)ENSG00000054282 [Gene_View]  chr1:243419307-243663393 [Contig_View]  SDCCAG8 [Vega]
Ensembl hg38 (Hinxton)ENSG00000054282 [Gene_View]  chr1:243419307-243663393 [Contig_View]  SDCCAG8 [Vega]
ICGC DataPortalENSG00000054282
cBioPortalSDCCAG8
AceView (NCBI)SDCCAG8
Genatlas (Paris)SDCCAG8
WikiGenes10806
SOURCE (Princeton)SDCCAG8
Genomic and cartography
GoldenPath hg19 (UCSC)SDCCAG8  -     chr1:243419307-243663393 +  1q43   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SDCCAG8  -     1q43   [Description]    (hg38-Dec_2013)
EnsemblSDCCAG8 - 1q43 [CytoView hg19]  SDCCAG8 - 1q43 [CytoView hg38]
Mapping of homologs : NCBISDCCAG8 [Mapview hg19]  SDCCAG8 [Mapview hg38]
OMIM209900   613524   613615   
Gene and transcription
Genbank (Entrez)AF039690 AF161348 AF250731 AK023586 AK297105
RefSeq transcript (Entrez)NM_006642
RefSeq genomic (Entrez)AC_000133 NC_000001 NC_018912 NG_027811 NT_167186 NT_187519 NW_001838553 NW_004929294
Consensus coding sequences : CCDS (NCBI)SDCCAG8
Cluster EST : UnigeneHs.591530 [ NCBI ]
CGAP (NCI)Hs.591530
Alternative Splicing : Fast-db (Paris)GSHG0001585
Alternative Splicing GalleryENSG00000054282
Gene ExpressionSDCCAG8 [ NCBI-GEO ]     SDCCAG8 [ SEEK ]   SDCCAG8 [ MEM ]
SOURCE (Princeton)Expression in : [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86SQ7 (Uniprot)
NextProtQ86SQ7  [Medical]
With graphics : InterProQ86SQ7
Splice isoforms : SwissVarQ86SQ7 (Swissvar)
Related proteins : CluSTrQ86SQ7
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
DMDM Disease mutations10806
Blocks (Seattle)Q86SQ7
Human Protein AtlasENSG00000054282
Peptide AtlasQ86SQ7
HPRD10215
IPIIPI00873338   IPI00186006   IPI00334336   IPI00854656   IPI00657884   
Protein Interaction databases
DIP (DOE-UCLA)Q86SQ7
IntAct (EBI)Q86SQ7
FunCoupENSG00000054282
BioGRIDSDCCAG8
IntegromeDBSDCCAG8
STRING (EMBL)SDCCAG8
Ontologies - Pathways
QuickGOQ86SQ7
Ontology : AmiGOG2/M transition of mitotic cell cycle  mitotic cell cycle  protein binding  centrosome  centriole  cytosol  cell-cell junction  establishment of cell polarity  tube formation  
Ontology : EGO-EBIG2/M transition of mitotic cell cycle  mitotic cell cycle  protein binding  centrosome  centriole  cytosol  cell-cell junction  establishment of cell polarity  tube formation  
Protein Interaction DatabaseSDCCAG8
DoCM (Curated mutations)SDCCAG8
Wikipedia pathwaysSDCCAG8
Gene fusion - rearrangements
Polymorphisms : SNP, variants
NCBI Variation ViewerSDCCAG8 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SDCCAG8
dbVarSDCCAG8
ClinVarSDCCAG8
1000_GenomesSDCCAG8 
Exome Variant ServerSDCCAG8
SNP (GeneSNP Utah)SDCCAG8
SNP : HGBaseSDCCAG8
Genetic variants : HAPMAPSDCCAG8
Genomic VariantsSDCCAG8  SDCCAG8 [DGVbeta]
Mutations
ICGC Data PortalENSG00000054282 
Somatic Mutations in Cancer : COSMICSDCCAG8 
CONAN: Copy Number AnalysisSDCCAG8 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)Eye diseases - LOVD
LOVD (Leiden Open Variation Database)EURO-WABB PROJECT OPEN VARIATION DATABASE
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)1:243419307-243663393
Mutations and Diseases : HGMDSDCCAG8
OMIM209900    613524    613615   
MedgenSDCCAG8
NextProtQ86SQ7 [Medical]
GENETestsSDCCAG8
Disease Genetic AssociationSDCCAG8
Huge Navigator SDCCAG8 [HugePedia]  SDCCAG8 [HugeCancerGEM]
snp3D : Map Gene to Disease10806
DGIdb (Drug Gene Interaction db)SDCCAG8
General knowledge
Homologs : HomoloGeneSDCCAG8
Homology/Alignments : Family Browser (UCSC)SDCCAG8
Phylogenetic Trees/Animal Genes : TreeFamSDCCAG8
Chemical/Protein Interactions : CTD10806
Chemical/Pharm GKB GenePA35601
Clinical trialSDCCAG8
Cancer Resource (Charite)ENSG00000054282
Other databases
Probes
Litterature
PubMed25 Pubmed reference(s) in Entrez
CoreMineSDCCAG8
GoPubMedSDCCAG8
iHOPSDCCAG8
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2014Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sun Dec 21 01:20:27 CET 2014

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