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SDE2 (SDE2 telomere maintenance homolog (S. pombe))

Identity

Alias_namesC1orf55
chromosome 1 open reading frame 55
SDE2 telomere maintenance homolog (S. pombe)
Alias_symbol (synonym)FLJ35382
Other aliasdJ671D7.1
HGNC (Hugo) SDE2
LocusID (NCBI) 163859
Atlas_Id 73066
Location 1q42.12  [Link to chromosome band 1q42]
Location_base_pair Starts at 226170403 and ends at 226187066 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
SDE2 (1q42.12) / CCDC190 (1q23.3)SDE2 (1q42.12) / SLC22A15 (1p13.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SDE2   26643
Cards
Entrez_Gene (NCBI)SDE2  163859  SDE2 telomere maintenance homolog (S. pombe)
AliasesC1orf55; dJ671D7.1
GeneCards (Weizmann)SDE2
Ensembl hg19 (Hinxton)ENSG00000143751 [Gene_View]  chr1:226170403-226187066 [Contig_View]  SDE2 [Vega]
Ensembl hg38 (Hinxton)ENSG00000143751 [Gene_View]  chr1:226170403-226187066 [Contig_View]  SDE2 [Vega]
ICGC DataPortalENSG00000143751
TCGA cBioPortalSDE2
AceView (NCBI)SDE2
Genatlas (Paris)SDE2
WikiGenes163859
SOURCE (Princeton)SDE2
Genetics Home Reference (NIH)SDE2
Genomic and cartography
GoldenPath hg19 (UCSC)SDE2  -     chr1:226170403-226187066 -  1q42.12   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SDE2  -     1q42.12   [Description]    (hg38-Dec_2013)
EnsemblSDE2 - 1q42.12 [CytoView hg19]  SDE2 - 1q42.12 [CytoView hg38]
Mapping of homologs : NCBISDE2 [Mapview hg19]  SDE2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK092701 AK127780 AK291008 AK308441 BC016290
RefSeq transcript (Entrez)NM_152608
RefSeq genomic (Entrez)NC_000001 NC_018912 NT_167186 NW_004929294
Consensus coding sequences : CCDS (NCBI)SDE2
Cluster EST : UnigeneHs.520192 [ NCBI ]
CGAP (NCI)Hs.520192
Alternative Splicing GalleryENSG00000143751
Gene ExpressionSDE2 [ NCBI-GEO ]   SDE2 [ EBI - ARRAY_EXPRESS ]   SDE2 [ SEEK ]   SDE2 [ MEM ]
Gene Expression Viewer (FireBrowse)SDE2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)163859
GTEX Portal (Tissue expression)SDE2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6IQ49   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6IQ49  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6IQ49
Splice isoforms : SwissVarQ6IQ49
PhosPhoSitePlusQ6IQ49
Domains : Interpro (EBI)Sde2_N   
Domain families : Pfam (Sanger)Telomere_Sde2 (PF13019)   
Domain families : Pfam (NCBI)pfam13019   
Conserved Domain (NCBI)SDE2
DMDM Disease mutations163859
Blocks (Seattle)SDE2
SuperfamilyQ6IQ49
Human Protein AtlasENSG00000143751
Peptide AtlasQ6IQ49
HPRD08180
IPIIPI00167998   IPI00871233   IPI00643818   
Protein Interaction databases
DIP (DOE-UCLA)Q6IQ49
IntAct (EBI)Q6IQ49
FunCoupENSG00000143751
BioGRIDSDE2
STRING (EMBL)SDE2
ZODIACSDE2
Ontologies - Pathways
QuickGOQ6IQ49
Ontology : AmiGOnucleus  
Ontology : EGO-EBInucleus  
NDEx NetworkSDE2
Atlas of Cancer Signalling NetworkSDE2
Wikipedia pathwaysSDE2
Orthology - Evolution
OrthoDB163859
GeneTree (enSembl)ENSG00000143751
Phylogenetic Trees/Animal Genes : TreeFamSDE2
HOVERGENQ6IQ49
HOGENOMQ6IQ49
Homologs : HomoloGeneSDE2
Homology/Alignments : Family Browser (UCSC)SDE2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSDE2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SDE2
dbVarSDE2
ClinVarSDE2
1000_GenomesSDE2 
Exome Variant ServerSDE2
ExAC (Exome Aggregation Consortium)SDE2 (select the gene name)
Genetic variants : HAPMAP163859
Genomic Variants (DGV)SDE2 [DGVbeta]
DECIPHER (Syndromes)1:226170403-226187066  ENSG00000143751
CONAN: Copy Number AnalysisSDE2 
Mutations
ICGC Data PortalSDE2 
TCGA Data PortalSDE2 
Broad Tumor PortalSDE2
OASIS PortalSDE2 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDSDE2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SDE2
DgiDB (Drug Gene Interaction Database)SDE2
DoCM (Curated mutations)SDE2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SDE2 (select a term)
intoGenSDE2
Cancer3DSDE2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenSDE2
Genetic Testing Registry SDE2
NextProtQ6IQ49 [Medical]
TSGene163859
GENETestsSDE2
Huge Navigator SDE2 [HugePedia]
snp3D : Map Gene to Disease163859
BioCentury BCIQSDE2
ClinGenSDE2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD163859
Chemical/Pharm GKB GenePA142672506
Clinical trialSDE2
Miscellaneous
canSAR (ICR)SDE2 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSDE2
EVEXSDE2
GoPubMedSDE2
iHOPSDE2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:42:37 CET 2017

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