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SDE2 (SDE2 telomere maintenance homolog)

Identity

Alias (NCBI)C1orf55
dJ671D7.1
HGNC (Hugo) SDE2
HGNC Alias symbFLJ35382
HGNC Previous nameC1orf55
HGNC Previous namechromosome 1 open reading frame 55
 SDE2 telomere maintenance homolog (S. pombe)
LocusID (NCBI) 163859
Atlas_Id 73066
Location 1q42.12  [Link to chromosome band 1q42]
Location_base_pair Starts at 225982702 and ends at 225999343 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
SDE2 (1q42.12) / CCDC190 (1q23.3)SDE2 (1q42.12) / SLC22A15 (1p13.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)SDE2   26643
Cards
Entrez_Gene (NCBI)SDE2    SDE2 telomere maintenance homolog
AliasesC1orf55; dJ671D7.1
GeneCards (Weizmann)SDE2
Ensembl hg19 (Hinxton)ENSG00000143751 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000143751 [Gene_View]  ENSG00000143751 [Sequence]  chr1:225982702-225999343 [Contig_View]  SDE2 [Vega]
ICGC DataPortalENSG00000143751
TCGA cBioPortalSDE2
AceView (NCBI)SDE2
Genatlas (Paris)SDE2
SOURCE (Princeton)SDE2
Genetics Home Reference (NIH)SDE2
Genomic and cartography
GoldenPath hg38 (UCSC)SDE2  -     chr1:225982702-225999343 -  1q42.12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SDE2  -     1q42.12   [Description]    (hg19-Feb_2009)
GoldenPathSDE2 - 1q42.12 [CytoView hg19]  SDE2 - 1q42.12 [CytoView hg38]
ImmunoBaseENSG00000143751
Genome Data Viewer NCBISDE2 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AK092701 AK127780 AK291008 AK308441 BC016290
RefSeq transcript (Entrez)NM_152608
Consensus coding sequences : CCDS (NCBI)SDE2
Gene ExpressionSDE2 [ NCBI-GEO ]   SDE2 [ EBI - ARRAY_EXPRESS ]   SDE2 [ SEEK ]   SDE2 [ MEM ]
Gene Expression Viewer (FireBrowse)SDE2 [ Firebrowse - Broad ]
GenevisibleExpression of SDE2 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)163859
GTEX Portal (Tissue expression)SDE2
Human Protein AtlasENSG00000143751-SDE2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6IQ49   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6IQ49  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6IQ49
PhosPhoSitePlusQ6IQ49
Domains : Interpro (EBI)Sde2_N   
Domain families : Pfam (Sanger)Sde2_N_Ubi (PF13019)   
Domain families : Pfam (NCBI)pfam13019   
Conserved Domain (NCBI)SDE2
PDB (RSDB)6QDV   
PDB Europe6QDV   
PDB (PDBSum)6QDV   
PDB (IMB)6QDV   
Structural Biology KnowledgeBase6QDV   
SCOP (Structural Classification of Proteins)6QDV   
CATH (Classification of proteins structures)6QDV   
SuperfamilyQ6IQ49
AlphaFold pdb e-kbQ6IQ49   
Human Protein Atlas [tissue]ENSG00000143751-SDE2 [tissue]
HPRD08180
Protein Interaction databases
DIP (DOE-UCLA)Q6IQ49
IntAct (EBI)Q6IQ49
BioGRIDSDE2
STRING (EMBL)SDE2
ZODIACSDE2
Ontologies - Pathways
QuickGOQ6IQ49
Ontology : AmiGOdamaged DNA binding  protein binding  nucleus  nucleus  nucleoplasm  Golgi apparatus  cytosol  plasma membrane  DNA replication  protein processing  protein ubiquitination  nuclear speck  mitotic G1 DNA damage checkpoint signaling  cellular response to UV  cell division  
Ontology : EGO-EBIdamaged DNA binding  protein binding  nucleus  nucleus  nucleoplasm  Golgi apparatus  cytosol  plasma membrane  DNA replication  protein processing  protein ubiquitination  nuclear speck  mitotic G1 DNA damage checkpoint signaling  cellular response to UV  cell division  
NDEx NetworkSDE2
Atlas of Cancer Signalling NetworkSDE2
Wikipedia pathwaysSDE2
Orthology - Evolution
OrthoDB163859
GeneTree (enSembl)ENSG00000143751
Phylogenetic Trees/Animal Genes : TreeFamSDE2
Homologs : HomoloGeneSDE2
Homology/Alignments : Family Browser (UCSC)SDE2
Gene fusions - Rearrangements
Fusion : QuiverSDE2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSDE2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SDE2
dbVarSDE2
ClinVarSDE2
MonarchSDE2
1000_GenomesSDE2 
Exome Variant ServerSDE2
GNOMAD BrowserENSG00000143751
Varsome BrowserSDE2
ACMGSDE2 variants
VarityQ6IQ49
Genomic Variants (DGV)SDE2 [DGVbeta]
DECIPHERSDE2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSDE2 
Mutations
ICGC Data PortalSDE2 
TCGA Data PortalSDE2 
Broad Tumor PortalSDE2
OASIS PortalSDE2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSDE2  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DSDE2
Mutations and Diseases : HGMDSDE2
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaSDE2
DgiDB (Drug Gene Interaction Database)SDE2
DoCM (Curated mutations)SDE2
CIViC (Clinical Interpretations of Variants in Cancer)SDE2
Cancer3DSDE2
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETSDE2
MedgenSDE2
Genetic Testing Registry SDE2
NextProtQ6IQ49 [Medical]
GENETestsSDE2
Target ValidationSDE2
Huge Navigator SDE2 [HugePedia]
ClinGenSDE2
Clinical trials, drugs, therapy
MyCancerGenomeSDE2
Protein Interactions : CTDSDE2
Pharm GKB GenePA142672506
PharosQ6IQ49
Clinical trialSDE2
Miscellaneous
canSAR (ICR)SDE2
HarmonizomeSDE2
DataMed IndexSDE2
Probes
Litterature
PubMed19 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXSDE2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 16:20:04 CEST 2021

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