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SDF2 (stromal cell derived factor 2)

Identity

Alias_namesstromal cell-derived factor 2
Other alias-
HGNC (Hugo) SDF2
LocusID (NCBI) 6388
Atlas_Id 73067
Location 17q11.2  [Link to chromosome band 17q11]
Location_base_pair Starts at 28648356 and ends at 28662172 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
SDF2 (17q11.2) / MAP2K6 (17q24.3)SDF2 (17q11.2) / RPTOR (17q25.3)YPEL2 (17q22) / SDF2 (17q11.2)
SDF2 RPTORSDF2 MAP2K6

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SDF2   10675
Cards
Entrez_Gene (NCBI)SDF2  6388  stromal cell derived factor 2
Aliases
GeneCards (Weizmann)SDF2
Ensembl hg19 (Hinxton)ENSG00000132581 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000132581 [Gene_View]  chr17:28648356-28662172 [Contig_View]  SDF2 [Vega]
ICGC DataPortalENSG00000132581
TCGA cBioPortalSDF2
AceView (NCBI)SDF2
Genatlas (Paris)SDF2
WikiGenes6388
SOURCE (Princeton)SDF2
Genetics Home Reference (NIH)SDF2
Genomic and cartography
GoldenPath hg38 (UCSC)SDF2  -     chr17:28648356-28662172 -  17q11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SDF2  -     17q11.2   [Description]    (hg19-Feb_2009)
EnsemblSDF2 - 17q11.2 [CytoView hg19]  SDF2 - 17q11.2 [CytoView hg38]
Mapping of homologs : NCBISDF2 [Mapview hg19]  SDF2 [Mapview hg38]
OMIM602934   
Gene and transcription
Genbank (Entrez)AK310890 AW026433 BC000500 BC001406 BQ056236
RefSeq transcript (Entrez)NM_006923
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SDF2
Cluster EST : UnigeneHs.514036 [ NCBI ]
CGAP (NCI)Hs.514036
Alternative Splicing GalleryENSG00000132581
Gene ExpressionSDF2 [ NCBI-GEO ]   SDF2 [ EBI - ARRAY_EXPRESS ]   SDF2 [ SEEK ]   SDF2 [ MEM ]
Gene Expression Viewer (FireBrowse)SDF2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)6388
GTEX Portal (Tissue expression)SDF2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ99470   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ99470  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ99470
Splice isoforms : SwissVarQ99470
PhosPhoSitePlusQ99470
Domaine pattern : Prosite (Expaxy)MIR (PS50919)   
Domains : Interpro (EBI)GlyclTrfase_39-like    MIR_motif   
Domain families : Pfam (Sanger)MIR (PF02815)   
Domain families : Pfam (NCBI)pfam02815   
Domain families : Smart (EMBL)MIR (SM00472)  
Conserved Domain (NCBI)SDF2
DMDM Disease mutations6388
Blocks (Seattle)SDF2
SuperfamilyQ99470
Human Protein AtlasENSG00000132581
Peptide AtlasQ99470
HPRD04243
IPIIPI00293167   
Protein Interaction databases
DIP (DOE-UCLA)Q99470
IntAct (EBI)Q99470
FunCoupENSG00000132581
BioGRIDSDF2
STRING (EMBL)SDF2
ZODIACSDF2
Ontologies - Pathways
QuickGOQ99470
Ontology : AmiGOdolichyl-phosphate-mannose-protein mannosyltransferase activity  extracellular space  endoplasmic reticulum membrane  protein glycosylation  protein O-linked mannosylation  ER-associated misfolded protein catabolic process  
Ontology : EGO-EBIdolichyl-phosphate-mannose-protein mannosyltransferase activity  extracellular space  endoplasmic reticulum membrane  protein glycosylation  protein O-linked mannosylation  ER-associated misfolded protein catabolic process  
NDEx NetworkSDF2
Atlas of Cancer Signalling NetworkSDF2
Wikipedia pathwaysSDF2
Orthology - Evolution
OrthoDB6388
GeneTree (enSembl)ENSG00000132581
Phylogenetic Trees/Animal Genes : TreeFamSDF2
HOVERGENQ99470
HOGENOMQ99470
Homologs : HomoloGeneSDF2
Homology/Alignments : Family Browser (UCSC)SDF2
Gene fusions - Rearrangements
Fusion: TCGASDF2 RPTOR
Fusion: TCGASDF2 MAP2K6
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSDF2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SDF2
dbVarSDF2
ClinVarSDF2
1000_GenomesSDF2 
Exome Variant ServerSDF2
ExAC (Exome Aggregation Consortium)SDF2 (select the gene name)
Genetic variants : HAPMAP6388
Genomic Variants (DGV)SDF2 [DGVbeta]
DECIPHERSDF2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSDF2 
Mutations
ICGC Data PortalSDF2 
TCGA Data PortalSDF2 
Broad Tumor PortalSDF2
OASIS PortalSDF2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSDF2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSDF2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SDF2
DgiDB (Drug Gene Interaction Database)SDF2
DoCM (Curated mutations)SDF2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SDF2 (select a term)
intoGenSDF2
Cancer3DSDF2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM602934   
Orphanet
MedgenSDF2
Genetic Testing Registry SDF2
NextProtQ99470 [Medical]
TSGene6388
GENETestsSDF2
Target ValidationSDF2
Huge Navigator SDF2 [HugePedia]
snp3D : Map Gene to Disease6388
BioCentury BCIQSDF2
ClinGenSDF2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD6388
Chemical/Pharm GKB GenePA35603
Clinical trialSDF2
Miscellaneous
canSAR (ICR)SDF2 (select the gene name)
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSDF2
EVEXSDF2
GoPubMedSDF2
iHOPSDF2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:40:11 CEST 2017

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