Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

SDF2L1 (stromal cell derived factor 2 like 1)

Identity

Alias_namesstromal cell-derived factor 2-like 1
Alias_symbol (synonym)AP000553.C22.4
OTTHUMT00000075032
Other alias-
HGNC (Hugo) SDF2L1
LocusID (NCBI) 23753
Atlas_Id 42233
Location 22q11.21  [Link to chromosome band 22q11]
Location_base_pair Starts at 21642253 and ends at 21644299 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
DPYSL2 (8p21.2) / SDF2L1 (22q11.21)SDF2L1 (22q11.21) / DUOX2 (15q21.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SDF2L1   10676
Cards
Entrez_Gene (NCBI)SDF2L1  23753  stromal cell derived factor 2 like 1
Aliases
GeneCards (Weizmann)SDF2L1
Ensembl hg19 (Hinxton)ENSG00000128228 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000128228 [Gene_View]  chr22:21642253-21644299 [Contig_View]  SDF2L1 [Vega]
ICGC DataPortalENSG00000128228
TCGA cBioPortalSDF2L1
AceView (NCBI)SDF2L1
Genatlas (Paris)SDF2L1
WikiGenes23753
SOURCE (Princeton)SDF2L1
Genetics Home Reference (NIH)SDF2L1
Genomic and cartography
GoldenPath hg38 (UCSC)SDF2L1  -     chr22:21642253-21644299 +  22q11.21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SDF2L1  -     22q11.21   [Description]    (hg19-Feb_2009)
EnsemblSDF2L1 - 22q11.21 [CytoView hg19]  SDF2L1 - 22q11.21 [CytoView hg38]
Mapping of homologs : NCBISDF2L1 [Mapview hg19]  SDF2L1 [Mapview hg38]
OMIM607551   
Gene and transcription
Genbank (Entrez)AB043007 AF277316 AY359118 BC132849 BC132851
RefSeq transcript (Entrez)NM_022044
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SDF2L1
Cluster EST : UnigeneHs.303116 [ NCBI ]
CGAP (NCI)Hs.303116
Alternative Splicing GalleryENSG00000128228
Gene ExpressionSDF2L1 [ NCBI-GEO ]   SDF2L1 [ EBI - ARRAY_EXPRESS ]   SDF2L1 [ SEEK ]   SDF2L1 [ MEM ]
Gene Expression Viewer (FireBrowse)SDF2L1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)23753
GTEX Portal (Tissue expression)SDF2L1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9HCN8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9HCN8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9HCN8
Splice isoforms : SwissVarQ9HCN8
PhosPhoSitePlusQ9HCN8
Domaine pattern : Prosite (Expaxy)ER_TARGET (PS00014)    MIR (PS50919)   
Domains : Interpro (EBI)GlyclTrfase_39-like    MIR_motif   
Domain families : Pfam (Sanger)MIR (PF02815)   
Domain families : Pfam (NCBI)pfam02815   
Domain families : Smart (EMBL)MIR (SM00472)  
Conserved Domain (NCBI)SDF2L1
DMDM Disease mutations23753
Blocks (Seattle)SDF2L1
SuperfamilyQ9HCN8
Human Protein AtlasENSG00000128228
Peptide AtlasQ9HCN8
HPRD09614
IPIIPI00106642   
Protein Interaction databases
DIP (DOE-UCLA)Q9HCN8
IntAct (EBI)Q9HCN8
FunCoupENSG00000128228
BioGRIDSDF2L1
STRING (EMBL)SDF2L1
ZODIACSDF2L1
Ontologies - Pathways
QuickGOQ9HCN8
Ontology : AmiGOdolichyl-phosphate-mannose-protein mannosyltransferase activity  endoplasmic reticulum lumen  endoplasmic reticulum membrane  endoplasmic reticulum chaperone complex  protein O-linked mannosylation  regulation of apoptotic process  chaperone binding  ATPase binding  misfolded protein binding  ER-associated misfolded protein catabolic process  
Ontology : EGO-EBIdolichyl-phosphate-mannose-protein mannosyltransferase activity  endoplasmic reticulum lumen  endoplasmic reticulum membrane  endoplasmic reticulum chaperone complex  protein O-linked mannosylation  regulation of apoptotic process  chaperone binding  ATPase binding  misfolded protein binding  ER-associated misfolded protein catabolic process  
NDEx NetworkSDF2L1
Atlas of Cancer Signalling NetworkSDF2L1
Wikipedia pathwaysSDF2L1
Orthology - Evolution
OrthoDB23753
GeneTree (enSembl)ENSG00000128228
Phylogenetic Trees/Animal Genes : TreeFamSDF2L1
HOVERGENQ9HCN8
HOGENOMQ9HCN8
Homologs : HomoloGeneSDF2L1
Homology/Alignments : Family Browser (UCSC)SDF2L1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSDF2L1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SDF2L1
dbVarSDF2L1
ClinVarSDF2L1
1000_GenomesSDF2L1 
Exome Variant ServerSDF2L1
ExAC (Exome Aggregation Consortium)SDF2L1 (select the gene name)
Genetic variants : HAPMAP23753
Genomic Variants (DGV)SDF2L1 [DGVbeta]
DECIPHERSDF2L1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSDF2L1 
Mutations
ICGC Data PortalSDF2L1 
TCGA Data PortalSDF2L1 
Broad Tumor PortalSDF2L1
OASIS PortalSDF2L1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSDF2L1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSDF2L1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SDF2L1
DgiDB (Drug Gene Interaction Database)SDF2L1
DoCM (Curated mutations)SDF2L1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SDF2L1 (select a term)
intoGenSDF2L1
Cancer3DSDF2L1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607551   
Orphanet
MedgenSDF2L1
Genetic Testing Registry SDF2L1
NextProtQ9HCN8 [Medical]
TSGene23753
GENETestsSDF2L1
Target ValidationSDF2L1
Huge Navigator SDF2L1 [HugePedia]
snp3D : Map Gene to Disease23753
BioCentury BCIQSDF2L1
ClinGenSDF2L1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD23753
Chemical/Pharm GKB GenePA35604
Clinical trialSDF2L1
Miscellaneous
canSAR (ICR)SDF2L1 (select the gene name)
Probes
Litterature
PubMed21 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSDF2L1
EVEXSDF2L1
GoPubMedSDF2L1
iHOPSDF2L1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 12:54:41 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.