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SDHAF1 (succinate dehydrogenase complex assembly factor 1)

Identity

Alias_symbol (synonym)LYRM8
Other alias
HGNC (Hugo) SDHAF1
LocusID (NCBI) 644096
Atlas_Id 53739
Location 19q13.12  [Link to chromosome band 19q13]
Location_base_pair Starts at 35995188 and ends at 35996318 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
SDHAF1 (19q13.12) / TG (8q24.22)TG (8q24.22) / SDHAF1 (19q13.12)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SDHAF1   33867
Cards
Entrez_Gene (NCBI)SDHAF1  644096  succinate dehydrogenase complex assembly factor 1
AliasesLYRM8
GeneCards (Weizmann)SDHAF1
Ensembl hg19 (Hinxton)ENSG00000205138 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000205138 [Gene_View]  chr19:35995188-35996318 [Contig_View]  SDHAF1 [Vega]
ICGC DataPortalENSG00000205138
TCGA cBioPortalSDHAF1
AceView (NCBI)SDHAF1
Genatlas (Paris)SDHAF1
WikiGenes644096
SOURCE (Princeton)SDHAF1
Genetics Home Reference (NIH)SDHAF1
Genomic and cartography
GoldenPath hg38 (UCSC)SDHAF1  -     chr19:35995188-35996318 +  19q13.12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SDHAF1  -     19q13.12   [Description]    (hg19-Feb_2009)
EnsemblSDHAF1 - 19q13.12 [CytoView hg19]  SDHAF1 - 19q13.12 [CytoView hg38]
Mapping of homologs : NCBISDHAF1 [Mapview hg19]  SDHAF1 [Mapview hg38]
OMIM252011   612848   
Gene and transcription
Genbank (Entrez)AI954026 BC007205 BC064605 BC069054 BC137516
RefSeq transcript (Entrez)NM_001042631
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SDHAF1
Cluster EST : UnigeneHs.356460 [ NCBI ]
CGAP (NCI)Hs.356460
Alternative Splicing GalleryENSG00000205138
Gene ExpressionSDHAF1 [ NCBI-GEO ]   SDHAF1 [ EBI - ARRAY_EXPRESS ]   SDHAF1 [ SEEK ]   SDHAF1 [ MEM ]
Gene Expression Viewer (FireBrowse)SDHAF1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)644096
GTEX Portal (Tissue expression)SDHAF1
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6NFY7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6NFY7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6NFY7
Splice isoforms : SwissVarA6NFY7
PhosPhoSitePlusA6NFY7
Domains : Interpro (EBI)Complex1_LYR   
Domain families : Pfam (Sanger)Complex1_LYR (PF05347)   
Domain families : Pfam (NCBI)pfam05347   
Conserved Domain (NCBI)SDHAF1
DMDM Disease mutations644096
Blocks (Seattle)SDHAF1
SuperfamilyA6NFY7
Human Protein AtlasENSG00000205138
Peptide AtlasA6NFY7
IPIIPI00642491   
Protein Interaction databases
DIP (DOE-UCLA)A6NFY7
IntAct (EBI)A6NFY7
FunCoupENSG00000205138
BioGRIDSDHAF1
STRING (EMBL)SDHAF1
ZODIACSDHAF1
Ontologies - Pathways
QuickGOA6NFY7
Ontology : AmiGOmitochondrion  mitochondrial matrix  mitochondrial respiratory chain complex II assembly  
Ontology : EGO-EBImitochondrion  mitochondrial matrix  mitochondrial respiratory chain complex II assembly  
NDEx NetworkSDHAF1
Atlas of Cancer Signalling NetworkSDHAF1
Wikipedia pathwaysSDHAF1
Orthology - Evolution
OrthoDB644096
GeneTree (enSembl)ENSG00000205138
Phylogenetic Trees/Animal Genes : TreeFamSDHAF1
HOVERGENA6NFY7
HOGENOMA6NFY7
Homologs : HomoloGeneSDHAF1
Homology/Alignments : Family Browser (UCSC)SDHAF1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSDHAF1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SDHAF1
dbVarSDHAF1
ClinVarSDHAF1
1000_GenomesSDHAF1 
Exome Variant ServerSDHAF1
ExAC (Exome Aggregation Consortium)SDHAF1 (select the gene name)
Genetic variants : HAPMAP644096
Genomic Variants (DGV)SDHAF1 [DGVbeta]
DECIPHERSDHAF1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSDHAF1 
Mutations
ICGC Data PortalSDHAF1 
TCGA Data PortalSDHAF1 
Broad Tumor PortalSDHAF1
OASIS PortalSDHAF1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSDHAF1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSDHAF1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch SDHAF1
DgiDB (Drug Gene Interaction Database)SDHAF1
DoCM (Curated mutations)SDHAF1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SDHAF1 (select a term)
intoGenSDHAF1
Cancer3DSDHAF1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM252011    612848   
Orphanet3377   
MedgenSDHAF1
Genetic Testing Registry SDHAF1
NextProtA6NFY7 [Medical]
TSGene644096
GENETestsSDHAF1
Target ValidationSDHAF1
Huge Navigator SDHAF1 [HugePedia]
snp3D : Map Gene to Disease644096
BioCentury BCIQSDHAF1
ClinGenSDHAF1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD644096
Chemical/Pharm GKB GenePA165394270
Clinical trialSDHAF1
Miscellaneous
canSAR (ICR)SDHAF1 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSDHAF1
EVEXSDHAF1
GoPubMedSDHAF1
iHOPSDHAF1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 25 19:30:17 CEST 2017

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