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SDHAF3 (succinate dehydrogenase complex assembly factor 3)

Identity

Alias_namesACN9
ACN9 homolog (S. cerevisiae)
Alias_symbol (synonym)DC11
Sdh7
LYRM10
Other alias
HGNC (Hugo) SDHAF3
LocusID (NCBI) 57001
Atlas_Id 77652
Location 7q21.3  [Link to chromosome band 7q21]
Location_base_pair Starts at 97116593 and ends at 97181763 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
GAREM1 (18q12.1) / SDHAF3 (7q21.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SDHAF3   21752
Cards
Entrez_Gene (NCBI)SDHAF3  57001  succinate dehydrogenase complex assembly factor 3
AliasesACN9; DC11; LYRM10; Sdh7
GeneCards (Weizmann)SDHAF3
Ensembl hg19 (Hinxton)ENSG00000196636 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000196636 [Gene_View]  chr7:97116593-97181763 [Contig_View]  SDHAF3 [Vega]
ICGC DataPortalENSG00000196636
TCGA cBioPortalSDHAF3
AceView (NCBI)SDHAF3
Genatlas (Paris)SDHAF3
WikiGenes57001
SOURCE (Princeton)SDHAF3
Genetics Home Reference (NIH)SDHAF3
GenomiŃ and`captography
GoldenPath hg38 (UCSC)SDHAF3  -     chr7:97116593-97181763 +  7q21.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SDHAF3  -     7q21.3   [Description]    (hg19-Feb_2009)
EnsemblSDHAF3 - 7q21.3 [CytoView hg19]  SDHAF3 - 7q21.3 [CytoView hg38]
Mapping of homologs : NCBISDHAF3 [Mapview hg19]  SDHAF3 [Mapview hg38]
OMIM615773   
Gene and transcription
Genbank (Entrez)AF201933 BC020621 BC022858 BC028409 CD557710
RefSeq transcript (Entrez)NM_020186
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SDHAF3
Cluster EST : UnigeneHs.592269 [ NCBI ]
CGAP (NCI)Hs.592269
Alternative Splicing GalleryENSG00000196636
Gene ExpressionSDHAF3 [ NCBI-GEO ]   SDHAF3 [ EBI - ARRAY_EXPRESS ]   SDHAF3 [ SEEK ]   SDHAF3 [ MEM ]
Gene Expression Viewer (FireBrowse)SDHAF3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)57001
GTEX Portal (Tissue expression)SDHAF3
Human Protein AtlasENSG00000196636-SDHAF3 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NRP4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NRP4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NRP4
Splice isoforms : SwissVarQ9NRP4
PhosPhoSitePlusQ9NRP4
Domains : Interpro (EBI)ACN9   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SDHAF3
DMDM Disease mutations57001
Blocks (Seattle)SDHAF3
SuperfamilyQ9NRP4
Human Protein Atlas [tissue]ENSG00000196636-SDHAF3 [tissue]
Peptide AtlasQ9NRP4
HPRD16471
IPIIPI00743454   IPI00924588   
Protein Interaction databases
DIP (DOE-UCLA)Q9NRP4
IntAct (EBI)Q9NRP4
FunCoupENSG00000196636
BioGRIDSDHAF3
STRING (EMBL)SDHAF3
ZODIACSDHAF3
Ontologies - Pathways
QuickGOQ9NRP4
Ontology : AmiGOmitochondrial intermembrane space  mitochondrial intermembrane space  mitochondrial matrix  succinate metabolic process  regulation of gluconeogenesis  regulation of gluconeogenesis  response to oxidative stress  mitochondrial respiratory chain complex II assembly  
Ontology : EGO-EBImitochondrial intermembrane space  mitochondrial intermembrane space  mitochondrial matrix  succinate metabolic process  regulation of gluconeogenesis  regulation of gluconeogenesis  response to oxidative stress  mitochondrial respiratory chain complex II assembly  
NDEx NetworkSDHAF3
Atlas of Cancer Signalling NetworkSDHAF3
Wikipedia pathwaysSDHAF3
Orthology - Evolution
OrthoDB57001
GeneTree (enSembl)ENSG00000196636
Phylogenetic Trees/Animal Genes : TreeFamSDHAF3
HOVERGENQ9NRP4
HOGENOMQ9NRP4
Homologs : HomoloGeneSDHAF3
Homology/Alignments : Family Browser (UCSC)SDHAF3
Gene fusions - Rearrangements
Fusion: Tumor Portal SDHAF3
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSDHAF3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCCI)<»a>8/TD>SDHAF3
dbVarSDHAF3
ClinVarSDHAF3
1000_GenomesSDHAF3 
Exome Variant ServerSDHAF3
ExAC (Exome Aggregation Consortium)ENSG00000196636
GNOMAD BrowserENSG00000196636
Genetic variants : HAPMAP57001
Genomic Variants (DGV)SDHAF3 [DGVbeta]
DECIPHERSDHAF3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSDHAF3 
Mutations
ICGC Data PortalSDHAF3 
TCGA Data PortalSDHAF3 
Broad Tumor PortalSDHAF3
OASIS PortalSDHAF3 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDSDHAF3
BioMutasearch SDHAF3
DgiDB (Drug Gene Interaction Database)SDHAF3
DoCM (Curated mutations)SDHAF3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SDHAF3 (select a term)
intoGenSDHAF3
Cancer3DSDHAF3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615773   
Orphanet
MedgenSDHAF3
Genetic Testing Registry SDHAF3
NextProtQ9NRP4 [Medical]
TSGene57001
GENETestsSDHAF3
Target ValidationSDHAF3
Huge Navigator SDHAF3 [HugePedia]
snp3D : Map Gene to Disease57001
BioCentury BCIQSDHAF3
ClinGenSDHAF3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD57001
Chemical/Pharm GKB GenePA134976380
Clinical trialSDHAF3
Miscellaneous
canSAR (ICR)SDHAF3 (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSDHAF3
EVEXSDHAF3
GoPubMedSDHAF3
iHOPSDHAF3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 12:26:36 CET 2017

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