Atlas of Genetics and Cytogenetics in Oncology and Haematology


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SDHAP1 (succinate dehydrogenase complex flavoprotein subunit A pseudogene 1)

Identity

Alias_namesSDHAL1
SDHALP1
succinate dehydrogenase complex, subunit A, flavoprotein-like 1
succinate dehydrogenase complex, subunit A, flavoprotein pseudogene 1
succinate dehydrogenase complex subunit A, flavoprotein pseudogene 1
Other alias
HGNC (Hugo) SDHAP1
LocusID (NCBI) 255812
Atlas_Id 73068
Location 3q29  [Link to chromosome band 3q29]
Location_base_pair Starts at 195959921 and ends at 195990279 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SDHAP1   32455
Cards
Entrez_Gene (NCBI)SDHAP1  255812  succinate dehydrogenase complex flavoprotein subunit A pseudogene 1
AliasesSDHAL1; SDHALP1
GeneCards (Weizmann)SDHAP1
Ensembl hg19 (Hinxton)ENSG00000185485 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000185485 [Gene_View]  chr3:195959921-195990279 [Contig_View]  SDHAP1 [Vega]
ICGC DataPortalENSG00000185485
TCGA cBioPortalSDHAP1
AceView (NCBI)SDHAP1
Genatlas (Paris)SDHAP1
WikiGenes255812
SOURCE (Princeton)SDHAP1
Genetics Home Reference (NIH)SDHAP1
Genomic and cartography
GoldenPath hg38 (UCSC)SDHAP1  -     chr3:195959921-195990279 -  3q29   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SDHAP1  -     3q29   [Description]    (hg19-Feb_2009)
EnsemblSDHAP1 - 3q29 [CytoView hg19]  SDHAP1 - 3q29 [CytoView hg38]
Mapping of homologs : NCBISDHAP1 [Mapview hg19]  SDHAP1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF088032 AK299148 AK300421 BC071730
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SDHAP1
Cluster EST : UnigeneHs.596261 [ NCBI ]
CGAP (NCI)Hs.596261
Alternative Splicing GalleryENSG00000185485
Gene ExpressionSDHAP1 [ NCBI-GEO ]   SDHAP1 [ EBI - ARRAY_EXPRESS ]   SDHAP1 [ SEEK ]   SDHAP1 [ MEM ]
Gene Expression Viewer (FireBrowse)SDHAP1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)255812
GTEX Portal (Tissue expression)SDHAP1
Human Protein AtlasENSG00000185485-SDHAP1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SDHAP1
DMDM Disease mutations255812
Blocks (Seattle)SDHAP1
Human Protein Atlas [tissue]ENSG00000185485-SDHAP1 [tissue]
IPIIPI00798202   
Protein Interaction databases
FunCoupENSG00000185485
BioGRIDSDHAP1
STRING (EMBL)SDHAP1
ZODIACSDHAP1
Ontologies - Pathways
Huge Navigator SDHAP1 [HugePedia]
snp3D : Map Gene to Disease255812
BioCentury BCIQSDHAP1
ClinGenSDHAP1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD255812
Chemical/Pharm GKB GenePA143485609
Clinical trialSDHAP1
Miscellaneous
canSAR (ICR)SDHAP1 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSDHAP1
EVEXSDHAP1
GoPubMedSDHAP1
iHOPSDHAP1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:08:56 CET 2017

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