Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

SDIM1 (stress responsive DNAJB4 interacting membrane protein 1)

Identity

Other alias-
HGNC (Hugo) SDIM1
LocusID (NCBI) 100505705
Atlas_Id 73071
Location 6q27  [Link to chromosome band 6q27]
Location_base_pair Starts at 165893842 and ends at 165896237 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)SDIM1   38749
Cards
Entrez_Gene (NCBI)SDIM1  100505705  stress responsive DNAJB4 interacting membrane protein 1
Aliases
GeneCards (Weizmann)SDIM1
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]   [Sequence]  chr6:165893842-165896237 [Contig_View]  SDIM1 [Vega]
TCGA cBioPortalSDIM1
AceView (NCBI)SDIM1
Genatlas (Paris)SDIM1
WikiGenes100505705
SOURCE (Princeton)SDIM1
Genetics Home Reference (NIH)SDIM1
Genomic and cartography
GoldenPath hg38 (UCSC)SDIM1  -     chr6:165893842-165896237 -  6q27   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SDIM1  -     6q27   [Description]    (hg19-Feb_2009)
EnsemblSDIM1 - 6q27 [CytoView hg19]  SDIM1 - 6q27 [CytoView hg38]
Mapping of homologs : NCBISDIM1 [Mapview hg19]  SDIM1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK129633
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SDIM1
Cluster EST : UnigeneHs.722069 [ NCBI ]
CGAP (NCI)Hs.722069
Gene ExpressionSDIM1 [ NCBI-GEO ]   SDIM1 [ EBI - ARRAY_EXPRESS ]   SDIM1 [ SEEK ]   SDIM1 [ MEM ]
Gene Expression Viewer (FireBrowse)SDIM1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100505705
GTEX Portal (Tissue expression)SDIM1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6ZPB5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6ZPB5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6ZPB5
Splice isoforms : SwissVarQ6ZPB5
PhosPhoSitePlusQ6ZPB5
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SDIM1
DMDM Disease mutations100505705
Blocks (Seattle)SDIM1
SuperfamilyQ6ZPB5
Peptide AtlasQ6ZPB5
IPIIPI00443006   
Protein Interaction databases
DIP (DOE-UCLA)Q6ZPB5
IntAct (EBI)Q6ZPB5
BioGRIDSDIM1
STRING (EMBL)SDIM1
ZODIACSDIM1
Ontologies - Pathways
QuickGOQ6ZPB5
Ontology : AmiGOprotein binding  integral component of membrane  cellular response to stress  protein homodimerization activity  neuron apoptotic process  negative regulation of cell death  
Ontology : EGO-EBIprotein binding  integral component of membrane  cellular response to stress  protein homodimerization activity  neuron apoptotic process  negative regulation of cell death  
NDEx NetworkSDIM1
Atlas of Cancer Signalling NetworkSDIM1
Wikipedia pathwaysSDIM1
Orthology - Evolution
OrthoDB100505705
Phylogenetic Trees/Animal Genes : TreeFamSDIM1
HOVERGENQ6ZPB5
HOGENOMQ6ZPB5
Homologs : HomoloGeneSDIM1
Homology/Alignments : Family Browser (UCSC)SDIM1
Gene fusions - Rearrangements
Fusion : QuiverSDIM1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSDIM1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SDIM1
dbVarSDIM1
ClinVarSDIM1
1000_GenomesSDIM1 
Exome Variant ServerSDIM1
Varsome BrowserSDIM1
Genetic variants : HAPMAP100505705
Genomic Variants (DGV)SDIM1 [DGVbeta]
DECIPHERSDIM1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSDIM1 
Mutations
ICGC Data PortalSDIM1 
TCGA Data PortalSDIM1 
Broad Tumor PortalSDIM1
OASIS PortalSDIM1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSDIM1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSDIM1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SDIM1
DgiDB (Drug Gene Interaction Database)SDIM1
DoCM (Curated mutations)SDIM1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SDIM1 (select a term)
intoGenSDIM1
Cancer3DSDIM1(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETSDIM1
MedgenSDIM1
Genetic Testing Registry SDIM1
NextProtQ6ZPB5 [Medical]
TSGene100505705
GENETestsSDIM1
Target ValidationSDIM1
Huge Navigator SDIM1 [HugePedia]
snp3D : Map Gene to Disease100505705
BioCentury BCIQSDIM1
ClinGenSDIM1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100505705
Chemical/Pharm GKB GenePA166049035
Clinical trialSDIM1
Miscellaneous
canSAR (ICR)SDIM1 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSDIM1
EVEXSDIM1
GoPubMedSDIM1
iHOPSDIM1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Jul 30 14:28:24 CEST 2018

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.